Spiribacter roseus: BBH56_07390
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Entry
BBH56_07390 CDS
T06143
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
sros
Spiribacter roseus
Pathway
sros03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sros00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BBH56_07390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sros03021
]
BBH56_07390
03400 DNA repair and recombination proteins [BR:
sros03400
]
BBH56_07390
Enzymes [BR:
sros01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BBH56_07390
Transcription machinery [BR:
sros03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BBH56_07390
DNA repair and recombination proteins [BR:
sros03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BBH56_07390
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_XRCC3_RpoA
RAD51D_N
Motif
Other DBs
NCBI-ProteinID:
AUB78935
LinkDB
All DBs
Position
complement(1508994..1509992)
Genome browser
AA seq
332 aa
AA seq
DB search
MQGQFKDFLKPRVVEVDAVSDKRARIILEPLERGFGHTLGNALRRVLLSSMPGYAVTEVE
IDGVLHEYMAVDGVQEDVVDILLNLKGLAVRLSGREQATLRLSKKGPGTVTAADIAEESN
VEVKNPELVICNLTKAGEINMSITVASGRGYEPATARDPEEERTIGRLAVDATYSPVRRV
AYNVESARVEQRTDLDKLVMDVETSGVIEPEEAVRLAAGVLRDQMSVFVDLEGGEGADQP
RRKEPEVDPVLLRPIDDLELTVRSANCLKAEDIHYVGDLVQRTEVELLKTPNLGKKSLNE
IKEVLAQNGLQLGMRLEGWPPASLENGNRAMG
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atgcagggtcagtttaaggacttccttaaaccccgggtggttgaggtggatgcggtcagc
gacaagcgtgcccgcatcatccttgagccgcttgagcgcggtttcggacacacgctgggg
aatgcgctacgccgggttcttctttcttccatgccgggctatgcggtcaccgaggtcgag
atcgacggggtgctgcacgagtacatggccgtggatggagtgcaggaagatgtcgtcgac
atcctgctcaacctgaaaggactggcggtgcggctctccgggcgtgagcaggcaacgctt
cggctcagcaagaaggggcctgggacggtaaccgccgccgacatcgccgaggagtccaac
gtcgaggtcaagaatcccgagctggtgatctgcaatctcaccaaggccggtgagatcaat
atgtcgatcacggtggccagcggtcggggctacgagcccgccacggcacgtgatcccgag
gaagagcgcaccatcggccggctggccgtggacgcgacctacagcccggtccggcgtgtg
gcctacaacgtcgagagcgcacgtgtcgaacagcggacggacctggataaactggtcatg
gacgtcgagaccagtggcgtgatcgaacccgaggaagcagtgcgcctcgcggcgggcgtc
ctgcgcgaccagatgtcggtgttcgtcgacctcgagggcggcgaaggcgcggatcagccg
cgacgtaaggagccggaggttgatccggtcctgctgcggccgattgacgatctcgagctg
acggtgcggtccgccaactgcctgaaggcagaggacatccactacgtcggtgatctggtt
cagcgcaccgaggtggaattgctcaagacgccgaatctgggcaagaaatcactcaacgaa
atcaaggaagtccttgcacagaacgggcttcaactcggtatgcgtcttgagggctggccg
ccggcgagcctcgagaacggcaaccgggccatgggttaa
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