Spiribacter roseus: BBH56_09335
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Entry
BBH56_09335 CDS
T06143
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
sros
Spiribacter roseus
Pathway
sros03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sros00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BBH56_09335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sros03400
]
BBH56_09335
Enzymes [BR:
sros01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
BBH56_09335
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
BBH56_09335
DNA repair and recombination proteins [BR:
sros03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
BBH56_09335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
DUF7351
Motif
Other DBs
NCBI-ProteinID:
AUB79282
LinkDB
All DBs
Position
1893847..1894665
Genome browser
AA seq
272 aa
AA seq
DB search
MPELPEVETTRRGLEPHCVGRVIERAVVRESRLRWPVPAELATAITGARVWQLDRRGKYL
IMRLDSGSAVMLHLGMSGYIRVVPPHTPPLKHDHVDFLVGSDCCLRFHDPRRFGSIHLTE
EPAESHSLLRSLGPEPFDARFDGAYLYAQAGNRRLAVKAFIMDSRIVVGVGNIYATEALF
RAGIHPARAAGRVSRKRFEGLAATIREVLAEAIEAGGTTLRDFSRSDGQPGYFQQSLDAY
GRGGQPCRRCGRTLRTSRLGQRATVYCPGCQR
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaactacctgaagtcgagacgacacgtcggggccttgagccacactgtgtcggg
cgggtcatagaacgagccgttgtccgcgagtcgaggctgcgctggccggttcccgccgag
ttggcaacggcgatcaccggggctcgggtctggcagctggaccgtcgtggcaaatacctg
atcatgcggctcgactcaggtagcgctgtgatgctgcatctggggatgtccggctacatc
agagtggtcccgccgcacaccccgcccctcaagcatgaccatgtcgactttctcgtgggg
agtgactgctgtctgcggtttcatgatccgaggcgctttggaagcatccacctgaccgaa
gagcccgccgagtcacactcactgctgcgctcactggggcctgagccttttgatgcccgg
tttgatggcgcctatctttatgctcaggccggtaaccgacggctggcagtcaaggcattc
atcatggacagccgcatcgtcgtcggtgtcgggaacatctacgcgaccgaagccttgttt
cgtgcggggatccacccggcccgtgcggcaggtcgggtgtcccggaagcgcttcgagggc
ctcgctgccacaattcgggaagtgctcgccgaggcgatcgaggcagggggcacgaccctt
cgcgacttcagccgcagcgacggccagccgggctattttcagcaatctctggacgcttac
ggacgaggcggacagccctgcaggcgctgcggacggacgctgcgcacaagccgccttggc
cagcgcgccactgtgtactgccctggctgtcaacgctga
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