Staphylococcus roterodami: ML435_02225
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Entry
ML435_02225 CDS
T09562
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
srot
Staphylococcus roterodami
Pathway
srot03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
srot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ML435_02225 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srot03400
]
ML435_02225 (mfd)
Enzymes [BR:
srot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ML435_02225 (mfd)
DNA repair and recombination proteins [BR:
srot03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ML435_02225 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
RecG_dom3_C
AAA_22
SNF2-rel_dom
Glyco_hydro_115
UB2H
IstB_IS21
SCRE
DUF1421
Motif
Other DBs
NCBI-ProteinID:
UMT76100
LinkDB
All DBs
Position
487209..490715
Genome browser
AA seq
1168 aa
AA seq
DB search
MTILTTFIQENNHFQELNQVFGQKNTLVTGLSPSAKVTMIAEKYTQSNQQLLLITNNLYQ
ADKLETDFLQFVDAEELYKYPVQDIMTEEFSTQSPQLMSERIRTLTALAQGKKGLFIVPL
NGLKKWLTPVEMWQSHQMTLRVGDDIDVDQLLNKLVNMGYKRESVVSHIGEFSLRGGIID
IFPLIGQPVRIELFDTEIDSIRDFDVETQRSKDNVEEVDIITASDYIITDEVINHLKSEL
KAAYENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMYDKPSTIIDYFQKD
AIVAIDEFNRIKETEESLTTESDEFISNIIESGNGFIGQSFIKYDDFETLIEDYPATYFS
LFATTMPIKLNHIIKMTCKPVQQFYGQYDIMRSEFQRYVNRNYRIVVLVETETKVERMQA
MLSEMHIPSVTDMHSSMLAGQAAIIEGSLSEGFELPDMGLVVITERELFKSKQKKQRKRT
KAISNAEKIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGQTHRDYIKLQYKGTDQLFVP
VDQMDQVQKYVASEDKTPKLNKLGGSEWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ
FGSDTAEQTTFELDFPYELTPDQAKSIDEIKEDMQKSRPMDRLLCGDVGYGKTEVAVRAA
FKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKSG
FVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRT
LHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELARGGQVFYLYNKVQSI
YEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANT
LIIEDADRFGLSQLYQLRGRVGRSTRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSG
FKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPEPDVPEVEVD
LNLDAYLPTEYITNEQAKIEIYKKLRKTETHEQIMDIKDELIDRFNDYPVEVERLLDIVE
IKVHALHAGITLIKDNGKTIDIHLSVKATENIDGEVLFKATQPLGRTMKVGVQNSEMTIT
LTKQTQWLDSLKFLVKCIEESMRISDEA
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgacaatattaacaacgtttattcaagagaataatcattttcaagaacttaatcaggta
tttggacaaaaaaatacattagtaactggactttccccgtcagcaaaagtgacgatgatt
gctgaaaaatatacacaaagcaatcaacagttattattaattactaacaatttataccaa
gcggataaattagaaacagactttttacaattcgtagatgcagaggaattatataagtat
ccagtacaggatattatgactgaagaattttcaacacagagccctcaactgatgagtgaa
cgtattagaacattaactgcgttagctcaaggtaagaaagggttatttatcgttcctctt
aatggcttgaaaaagtggttaacgccagtagaaatgtggcaaagccatcaaatgacattg
cgagttggcgatgatatcgatgtggatcaattgcttaataaattggttaatatgggttat
aaacgagaatcggtcgtttctcatatcggcgaattttcattgcgcggaggtattattgat
atttttccacttattgggcaacctgttagaattgaacttttcgatactgaaattgattca
attcgagattttgatgtcgaaacacagcgttcaaaagataatgtagaggaagttgatatt
ataactgcaagtgattatatcattacagatgaagtgattaatcatcttaaatcagaattg
aaagcagcttatgaaaatacgagacctaaaatcgataaatcagtacgtaatgatctgaag
gaaacatatgaaagttttaaattgttcgaaagtacttattttgatcatcaaatattacga
cgcttagtagcatttatgtatgataaaccttcgacaattatagattattttcaaaaagat
gcaattgtagcaattgatgaattcaatcgcataaaagaaactgaggaaagtcttactaca
gaatcagatgagtttataagtaatattattgaaagtggtaatggttttattggacaaagt
tttataaaatatgatgattttgaaacattgattgaagactatccagctacttatttttca
ttatttgcgacaacaatgccgataaaacttaaccatattattaaaatgacatgtaaacct
gtacaacaattttatggtcaatatgatattatgcgctctgaatttcaacgttatgttaat
cggaattaccgtatcgttgtgttagttgagactgaaacgaaagttgaacgtatgcaagca
atgttaagtgaaatgcatattccttcagtgaccgacatgcacagctcaatgttggctgga
caggcagctattatcgaaggtagtttgtcagaaggatttgaactacctgatatgggacta
gttgtaataactgagcgagagctttttaaatcaaaacagaaaaaacaacgaaaacgcact
aaagcaatttcaaatgctgaaaaaataaaatcataccaggatttaaatgtaggagattat
attgttcatgtacatcatggtgtgggtagatatctaggtgttgaaactttagaagtcgga
caaacgcatcgtgactacattaaattacaatataaaggtacggatcaattgtttgtacct
gttgatcaaatggatcaagttcaaaaatatgtagcttcagaagataagacgccgaaatta
aacaaacttggcggtagtgagtggaaaaaaactaaagctaaagttcaacaaagtgttgaa
gatattgccgaagagttaatcgatctttataaagaacgagaaatggcagaaggttatcaa
tttggttctgacactgctgagcaaactacatttgaattagactttccgtatgaacttacg
ccagaccaagctaaatctattgatgaaattaaagaggatatgcaaaaatcacgtccaatg
gatcgtctgttatgtggtgatgttggttatggtaaaacagaagttgcagttcgagcagca
ttcaaagctgttatggaaggaaaacaagttgcgtttttagtgcctacaactattttagcg
caacagcattatgaaacattaatagagcgtatgcaggattttccagttgaaattcaatta
atgagtcgctttagaacacctaaagaaatcaaacaaacgaaagaaggacttaagtctgga
ttcgttgacattgttgttggtacacacaagttgctcagcaaagatatacaatacaaagat
ttaggcttattaatagtcgatgaagaacagcgttttggtgttcgccataaagaacgtatc
aagacattaaagcataatgttgatgtattaactttaacggcaacgcctataccaagaacg
ctccatatgagtatgctaggtgtacgtgatttgtcagtaattgaaacaccacctgaaaat
cgttttccagtacaaacatacgtgttagaacaaaatatgagttttattaaagaagcgtta
gagagagaattagcccgtggcggacaagtattttacttgtacaataaagtgcaatctatt
tatgaaaagcgtgaacaacttcaaatgttaatgcctgatgctaacatcgcagttgctcat
gggcagatgacggagcgagatttagaagaaacgatgctaagttttatcaataatgagtat
gacattttggtaacgacaacaatcatagaaactggtgtcgatgttccaaatgccaatact
ttaatcattgaagatgcagatcgttttggattaagtcaattgtatcaattaagaggacgt
gtcggacgttcgactcgaattggatatgcctatttcttacatccagcaaacaaagtgtta
acagagacggctgaagatcgattacaagctattaaagaatttacagaattgggctctgga
tttaagattgcaatgcgtgatttaaatatacgtggtgcaggtaacttattaggtaagcaa
caacatggctttattgacacggttggatttgatttatatagccaaatgttagaagaagct
gtaaatgagaaacgcggtattaaagaaccagaacctgatgtgccagaagttgaagtggat
ttaaacttagatgcatatttacctacagagtatataacaaatgagcaagctaagattgaa
atttataaaaagctacgaaaaacagaaacgcatgagcaaatcatggatattaaagatgag
ttgattgaccgttttaatgactatccggttgaagttgaacgtttgcttgatattgtagaa
ataaaagtacatgcattgcatgcaggaattacgttaattaaagataatgggaaaacaatc
gatattcatttatctgtaaaagctactgaaaacattgatggcgaagtgttgttcaaagct
acgcaacctcttggtagaacaatgaaagttggcgtacaaaatagtgaaatgacgataacg
ttaacgaaacaaacccaatggctagatagtcttaagtttctagtgaaatgtatcgaagaa
agtatgagaataagtgatgaagcataa
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