Staphylococcus roterodami: ML435_02510
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Entry
ML435_02510 CDS
T09562
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
srot
Staphylococcus roterodami
Pathway
srot03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
srot00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ML435_02510 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
srot03021
]
ML435_02510 (rpoC)
03400 DNA repair and recombination proteins [BR:
srot03400
]
ML435_02510 (rpoC)
Enzymes [BR:
srot01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ML435_02510 (rpoC)
Transcription machinery [BR:
srot03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ML435_02510 (rpoC)
DNA repair and recombination proteins [BR:
srot03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ML435_02510 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
UMT76877
LinkDB
All DBs
Position
544723..548319
Genome browser
AA seq
1198 aa
AA seq
DB search
MKIGLASPEKIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWECSCGKYKRVR
YKGMVCDRCGVEVTKSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLLLDMSPRALEEVI
YFASYVVVDPGPTGLEKKTLLSEAEFREYYDKYPGQFVAKMGAEGIKDLLEEIDLDEELK
LLRDELESATGQRLTRAIKRLEVVESFRNSGNKPSWMILDVLPIIPPEIRPMVQLDGGRF
ATSDLNDLYRRVINRNNRLKRLLDLGAPGIIVQNEKRMLQEAVDALIDNGRRGRPVTGPG
NRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIAVGPSLKMYQCGLPKEMALELFKPF
VMKELVQREIATNIKNAKSKIERMDDEVWDVLEEVIREHPVLLNRAPTLHRLGIQAFEPT
LVEGRAIRLHPLVTTAYNADFDGDQMAVHVPLSKEAQAEARMLMLAAQNILNPKDGKPVV
TPSQDMVLGNYYLTLERKDAVNTGAIFNNTNEVLKAYANGFVHLHTRIGVHASSFNNPTF
TEEQNKKILATSVGKIIFNEIIPDSFAYINEPTQENLERKTPVRYFIDPTTLGEGGLKEY
FEKEDLIEPFNKKFLGNIIAEVFNRFSITDTSMMLDRMKDLGFKFSSKAGITVGVADIVV
LPDKQQILDEHEKLVDRITKQFNRGLITEEERYNAVVEIWTDAKDQIQGELMQSLDKTNP
IFMMSDSGARGNASNFTQLAGMRGLMAAPSGKIIELPITSSFREGLTVLEYFISTHGARK
GLADTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGLLVSDIKEGTEMIEPFIERIEG
RYSKETIHHPETDEVIIRPDELITPEIAKKITDAGIEQMYIRSAFTCNARHGVCEKCYGK
NLATGEKVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGSDITQGLPRIQEIFEARNP
KGQAVITEIEGVVEDIKLAKDRQQEIVVKGANETRSYLASGTSRIIVEIGQPVQRGEVLT
EGSIEPKNYLSVAGLNATESYLLKEVQKVYRMQGVEIDDKHVEVMVRQMLRKVRIIEAGD
TKLLPGSLVDIHNFTDANREAFKHRKRPATAKPVLLGITKASLETESFLSAASFQETTRV
LTDAAIKGKRDDLLGLKENVIIGKLIPAGTGMRRYSDVKYEKTAKPVAEVEAQTEVTE
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atgaaaataggcttagcttcacctgaaaaaatccgctcatggtcatttggtgaggttaaa
aaacctgaaacaatcaactaccgtacattaaaacctgaaaaagatggtctattctgtgaa
agaattttcggacctacaaaagactgggaatgtagttgtggtaaatacaaacgtgttcgc
tacaaaggcatggtctgtgacagatgtggtgttgaagtaactaaatctaaagtacgtcgt
gaaagaatgggacacattgaacttgctgctccagtttcacacatttggtatttcaaagga
attccaagtcgtatgggattattgcttgatatgtcaccaagagcattagaagaagttatt
tacttcgcttcttatgttgttgtagacccaggtccaactggcttagaaaagaaaacatta
ttatctgaagctgaattcagagaatattatgataaataccctggtcaattcgttgctaaa
atgggtgcagaaggtatcaaagatttacttgaagagattgatttagacgaagaacttaaa
ttattgcgtgacgagttagaatcagctactggtcaaagacttactcgtgcaattaaacgt
ttagaagttgttgaatcattccgtaactcaggtaataaaccttcatggatgattttagat
gtacttccaatcatcccaccagaaattcgtccaatggttcaattagatggtggacgtttt
gcaacaagtgacttaaatgatttataccgtcgtgtaattaaccgtaataatcgtttgaaa
cgtttattagatttaggtgcacctggtattatcgttcaaaatgaaaaacgtatgttacaa
gaagcagttgatgctttaatagataatggtcgtcgtggtcgcccagttactggtccaggt
aaccgtccattaaaatctctatcacatatgttaaaaggtaaacaaggtcgtttccgtcaa
aacttacttggtaagcgtgttgactattcaggtcgttcggttatcgctgtaggtccaagc
ttgaaaatgtaccaatgtggtttaccaaaagaaatggcacttgagctatttaaacctttt
gtaatgaaagaattagttcaacgtgaaatcgctactaacattaaaaatgctaagagtaaa
atcgaacgcatggatgacgaagtatgggatgttttagaagaagtgattagagaacatcca
gttttacttaaccgtgcaccaacacttcacagattaggtattcaagcgtttgaaccgaca
ttagttgaaggccgtgcgattcgtcttcatccacttgtaacaacagcttataacgctgac
tttgatggtgaccaaatggctgttcacgttcctttatcaaaagaagctcaagctgaagca
agaatgttaatgttagctgcacaaaacatcttgaaccctaaagatggtaaaccagtagta
acaccatctcaggatatggtacttggtaactattaccttactttagaaagaaaagatgca
gtaaatacaggtgcaatctttaataatacaaatgaagtattaaaagcatatgcaaatgga
tttgttcatttacacacaagaatcggtgtgcatgcaagttcatttaacaaccctacattt
actgaagaacaaaacaagaagattcttgctacttcagtaggtaaaattattttcaatgaa
attattccagattcattcgcttatataaatgaacctacgcaagaaaacttagaaagaaaa
acacctgttagatatttcatcgatcctacgacattaggtgaaggtggcttaaaagaatac
tttgaaaaagaagatttaattgaaccattcaataaaaaattcttaggtaatattatcgct
gaagtattcaatagatttagtattactgatacatcaatgatgctagaccgtatgaaagac
ttaggtttcaaattctcatctaaagctggtattacagtaggtgttgctgatatcgtggta
ttacctgataagcaacaaatccttgatgaacatgaaaaattagtcgacagaattacaaaa
caattcaatcgtggtttaatcactgaagaagaaagatataatgcagttgttgaaatttgg
acagatgcaaaagatcaaattcaaggtgaattgatgcaatcacttgataaaacaaaccca
atcttcatgatgagtgattcaggtgcccgtggtaatgcatctaactttacacaattagcc
ggtatgcgtggtttaatggctgcaccatcaggtaagattatcgaattaccaatcacttca
tcattccgtgaaggtttaacagtacttgagtacttcatctcaactcatggtgcgcgtaaa
ggtcttgccgatacagcacttaaaactgctgactcaggatatcttactcgtcgtcttgtt
gacgtggcacaagatgttattgttcgtgaagaagactgtggtacagatagaggtttatta
gtttctgatattaaagaaggtacagaaatgattgaaccatttatcgaacgtattgaaggt
cgttactctaaagaaacaattcatcatcctgaaacagatgaagtaatcattcgtcctgat
gaattaattacacctgaaatcgctaagaaaattacagatgctggcatcgaacaaatgtat
attcgttcagcctttacatgtaatgcgagacacggtgtttgtgaaaaatgttacggtaaa
aaccttgcgactggtgaaaaagttgaagttggtgaagcagttggtacaatcgctgcacaa
tcaattggtgaaccaggaacacagcttacaatgcgtacgttccatacaggtggggtagcc
ggtagcgatatcacacaaggtcttcctcgtatccaagagattttcgaagcacgtaaccct
aaaggtcaagcagtgattacggaaatcgaaggtgttgttgaagatattaaattagcgaaa
gatagacaacaagaaattgttgtaaaaggtgctaatgaaacaagatcataccttgcttca
ggtacttcaagaataattgtagaaatcggtcaaccagtacaacgtggtgaagtattaact
gaaggttctattgagcctaagaattacttatcagttgctggattaaatgcgacagaaagt
tacttactaaaagaagtacaaaaagtttaccgtatgcaaggggtagaaatcgacgataaa
cacgttgaggttatggttagacaaatgttacgtaaagttagaattattgaagcaggtgat
acgaaattattaccaggttcattagttgatattcataactttacagatgcgaacagagaa
gcatttaaacaccgtaaacgtcctgcaacagctaaaccagtattactaggtattacgaaa
gcatcacttgaaacagaaagtttcttatctgcagcatcattccaagaaacaacaagagta
cttacagatgcagcaattaaaggtaaacgtgatgacttactaggtcttaaagaaaacgta
attattggtaaattaattccagcaggtacaggtatgagacgttatagtgacgttaaatac
gaaaagactgctaaaccagttgctgaagttgaagctcaaacagaagtgactgaataa
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