Staphylococcus roterodami: ML435_05865
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Entry
ML435_05865 CDS
T09562
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
srot
Staphylococcus roterodami
Pathway
srot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ML435_05865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srot03019
]
ML435_05865
Messenger RNA biogenesis [BR:
srot03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ML435_05865
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
vATP-synt_E
HTH_10
Imm49
Motif
Other DBs
NCBI-ProteinID:
UMT76766
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All DBs
Position
1252058..1253731
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AA seq
557 aa
AA seq
DB search
MSLIKKKNKDIRIIPLGGVGEIAKNMYIVEVDDEMFMLDAGLMFPEDEMLGIDIVIPDIS
YVLENKDKLKGIFLTHGHEHAIGAVSYVLEQLDAPVYGSKLTIALIKENMKARNIDKKVR
YYTVNNDSIMRFKNVNISFFNTTHSIPDSLGVCIHTSYGAIVYTGEFKFDQSLHGHYAPD
IKRMAEIGEEGVFVLISDSTEAEKPGYNTPENVIEHHMYDAFAKVRGRLIVSCYASNFIR
IQQVLNIASKLNRKVSFLGRSLESSFNIARKMGYFDIPKDLLVPITEVDNYPKNEVIIIA
TGMQGEPVEALSQMAQHKHKIMNIEEGDAVFLAITASANMEVIIANTLNELVRAGAHIIP
NNKKIHASSHGCMEELKMMINIMKPEYFIPVQGEFKMQIAHAKLAAEAGVAPEKIFLVEK
GDVINYNGKEMILNEKVNSGNILIDGIGIGDVGNIVLRDRHLLAEDGIFIAVVTLDPKNR
RIAAGPEIQSRGFVYVRESEDLLQEAEDKVREIVEAGLQEKRIEWSEIKQNMRDQISKLL
FESTKRRPMIIPVISEI
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
ttgagtttaataaagaaaaagaataaagatattcgcattataccactaggtggtgttggc
gaaatcgctaaaaatatgtatatcgttgaagtagacgatgaaatgtttatgttagatgct
ggacttatgtttccagaagatgaaatgttaggtattgatattgttataccggatatttcg
tacgtactagaaaataaagataagttaaaaggtatattccttacacacggacacgaacat
gcaattggtgcagtgagttatgttcttgaacaattagatgcaccagtttatggatctaaa
ttaactatagcgttgattaaagaaaatatgaaagcccgtaacattgataaaaaagttcgc
tattacacagttaataatgattcaattatgagatttaaaaacgttaatattagtttcttt
aatacaacacatagtattcctgatagtttaggtgtatgcatccatacttcatatggtgca
attgtttatactggagaatttaagttcgatcaaagtttacatggacattatgctccggat
attaaacgtatggctgaaattggtgaagaaggagtatttgtattaattagtgattctaca
gaagctgagaaacctggatacaatacacctgaaaatgtaatcgaacatcatatgtatgac
gcttttgctaaagtacgtggtcgcttgattgtatcttgttatgcatctaactttatacgt
atccaacaagtattgaatattgcaagtaagttaaatagaaaagtatcatttttaggtaga
tcacttgaaagttcatttaatattgcgcgtaaaatgggatacttcgatatacctaaagat
ttacttgttcctataacagaagttgataattatcctaaaaacgaagtaattatcattgcg
acaggtatgcaaggagagccagttgaagcattgagccaaatggcacaacacaaacataaa
attatgaatattgaagaaggcgatgctgtatttttagcaattacagcatcagcaaatatg
gaagtaatcattgcaaacacgcttaatgaactagttcgtgcgggtgcacatattattcct
aataataaaaagattcatgcatcaagtcatggttgtatggaagaattgaaaatgatgata
aacatcatgaaacctgaatacttcattcctgtacaaggtgaattcaaaatgcaaattgca
cacgcaaagttagcagcagaagcaggtgttgcacctgaaaagattttccttgttgaaaaa
ggagatgtcattaattacaacggtaaagaaatgatattaaatgaaaaggttaattcaggt
aatattttaattgatggtataggtataggggatgtaggaaatattgtcttacgagaccgt
catcttttagcggaggatggtatctttattgcggttgtaacgttagatcctaaaaataga
cgcattgctgcaggccctgaaattcagtctcgtggttttgtatatgtacgtgaaagtgaa
gatttattgcaagaagcagaagataaagttcgtgagattgtagaagcaggtttacaagaa
aagcgtattgaatggtctgaaattaagcaaaatatgcgcgatcaaattagtaaactttta
ttcgaaagtacgaaacgtcgtcctatgattattccagttatttctgaaatttaa
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