Streptococcus suis ST1 (serotype 1): SSUST1_0009
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Entry
SSUST1_0009 CDS
T02125
Symbol
trcF
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
srp
Streptococcus suis ST1 (serotype 1)
Pathway
srp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
srp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SSUST1_0009 (trcF)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srp03400
]
SSUST1_0009 (trcF)
Enzymes [BR:
srp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SSUST1_0009 (trcF)
DNA repair and recombination proteins [BR:
srp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SSUST1_0009 (trcF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
AAA_22
AAA_16
RecG_dom3_C
DUF1474
Motif
Other DBs
NCBI-ProteinID:
AER20443
LinkDB
All DBs
Position
6199..9693
Genome browser
AA seq
1164 aa
AA seq
DB search
MNILDLLHKNKRINQWQSGLNKSTRQLLLGLSGTSKSLVMATAYDSMAEKIMIVTANQND
AEKLVADLTAIIGSENVYNFFTDDSPIAEFVFASKERTQSRIESLNFLTDSTSSGIIVVS
MAACRVLLPSPETYKGSKIKLEVGQEIEVDKLVNNLVNIGYKKVSRVLTQGEFSQRGDIL
DIFDMQAETPYRIEFFGDEIDGIRIFDVDSQKSLENLDEISISPASDIILSSEDYSRASQ
YIQTAIEQSTLEEQQSYLREVLADMQTEYRHPDLRKFLSCIYEQSWTLLDYLPKSSPLFL
DDFHKIADKQAQFEKEIADFLTDDLQKSKTVSSLKYFASTYAELRKYKPATFFSSFQKGL
GNVKFDAFYQFTQHPMQEFFHQIPLLKDELTRYAKSNNTVVIQASSDVSLQTLQKTLQEY
DIHLPVHAADKLVEGQQQVTIGQLASGFHLMDEKLVFITEKEIFNKKMKRKTRRTNISNA
ERIKDYSELAVGDYVVHHVHGIGQYLGIETIEISGIHRDYLTVQYQNSDRISIPVEQIDL
LSKYLASDGKAPKVNKLNDGRFQRTKQKVQKQVEDIADDLIKLYAERSQLKGFAFSPDDE
NQIEFDNYFTHVETDDQLRSIDEIKKDMEKDSPMDRLLVGDVGFGKTEVAMRAAFKAVND
GKQVAILVPTTVLAQQHYANFQERFAEFPVNVDVMSRFKTKAEQEKTLEKLKKGQVDILI
GTHRLLSKDVVFADLGLLVIDEEQRFGVKHKERLKELKKKIDVLTLTATPIPRTLQMSML
GIRDLSVIETPPTNRYPVQTYVMETNPSVIRDAMLREIDRGGQVYYIYNKVDTIEQKVSE
LKELVPEATIGYVHGQMSEIQLENTLYAFVEGEYDILVTTTIIETGVDIPNANTLFIENA
DHMGLSTLYQLRGRVGRSSRIAYAYLMYRPDKSLTEVAEKRLEAIKGFTELGSGFKIAMQ
DLSIRGAGNILGAAQSGFIDSVGYEMYSQLLEQAILEKQGKASQRQKSNTEVNLQIDAYL
PSDYIGDQRQKIEIYKRIKNIDSRVNYQELQEELIDRFGEYPDVVAYLLEIGLLKSFLDQ
VFCHTVLRRQHQVTVTFEPMAGQIFLTQDYFEALSVTNLKAQITENKGKLAVVFNIQQKK
EYEILEELISFAEKLKEIKARKAE
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgaatatactcgatttacttcacaagaacaagcgaatcaatcagtggcagtctggctta
aacaagtcaactcgccaactattattaggactatctgggactagtaagtcacttgtaatg
gcgactgcctatgatagtatggctgagaaaataatgattgtgactgctaatcaaaatgat
gctgagaaattagttgcagatttaacagccattattggaagtgagaatgtttacaacttt
tttacagatgatagtcctattgccgagtttgtttttgcatcaaaagaacggactcaatca
aggattgaaagtttaaatttcttgacagattctactagttcaggaattatagttgttagt
atggctgcttgtcgggtcttattgccgagtcctgagacttataaaggttctaaaataaag
cttgaagttggtcaagaaatagaagttgacaaacttgtaaataatcttgtcaacatcggc
tacaaaaaagtgtctcgtgtactaacccagggagaatttagccaacgaggtgatattcta
gatatttttgacatgcaagcagaaactccttaccgaatagaattttttggagatgagatt
gatggcattcgtatctttgatgttgacagtcaaaaatccttagaaaatctagacgaaatc
tcgatctctccagcttccgatatcattttgtcttcggaagactatagtagagctagccaa
tacattcagacagctattgaacaatcgaccctagaggagcaacagtcttacttacgagaa
gtcttagctgatatgcagacggagtaccggcatccagatttgcgtaaattcttgtcctgt
atctatgaacaatcatggacattgttggattacttgccaaagagttctcccctattttta
gatgattttcataaaatcgctgataagcaggctcaatttgaaaaagaaattgcagacttt
ttgacagatgatttacagaagagtaaaacagtgtcaagtttgaaatattttgcctcaact
tacgctgaattgagaaaatacaaacctgccaccttcttttcaagttttcaaaaaggttta
ggcaatgtaaagtttgatgctttttatcaattcacacagcatcctatgcaggaatttttc
caccagattccactgttaaaagatgaattgactcgatatgcgaagtcaaacaataccgtt
gttattcaagcgagttctgatgtgagtttacagactttacagaaaactttacaagagtat
gatatccatcttccagtacatgcagcagataagttagtagaaggtcagcaacaggttacg
attggtcagttagcttcaggttttcatttgatggatgaaaaactagttttcatcactgaa
aaagagattttcaataagaaaatgaagcgtaagacacgtagaaccaatatttctaacgct
gaacgtattaaggactatagtgaattagcagttggtgactatgttgttcaccatgttcat
ggtatcggtcaatacctaggaattgagactattgaaatttcaggcattcatcgtgattat
ttaacggttcaatatcaaaactccgatcgcatttctattcctgtagaacaaattgatctt
ctctccaaatacttagcgtccgatgggaaagctccaaaagttaataagctaaacgatggc
cggttccaacgaaccaagcaaaaagttcagaagcaagtggaggatattgcagatgatttg
attaagctttatgcggagcgtagtcagctgaaaggctttgccttttcaccagatgatgag
aatcagattgagtttgacaactactttacacatgtggaaaccgacgaccaacttcgttcc
attgatgaaatcaaaaaagacatggaaaaagactctccaatggaccgtctgttagtagga
gatgtcggatttggtaagacagaggtagccatgcgcgctgccttcaaagcagtcaatgat
ggcaagcaagtagctattcttgttcctacgactgttttagcccagcaacattatgctaat
ttccaagaacgatttgctgaatttcctgtcaatgtggatgttatgagtcgttttaaaaca
aaggcagagcaggaaaaaacacttgagaagttgaaaaaaggtcaagttgatatcttgatt
ggtacccatcgccttctatcaaaagatgttgtttttgctgatttaggtttactggttatt
gacgaagagcaacggtttggtgtcaagcataaggaacgcttgaaggaattgaaaaagaaa
atagatgtcctaaccctaactgcaactccaattcctcggacattgcaaatgtccatgttg
ggaatccgcgatttatcagtaattgagactccaccgacaaatcgctatcctgtacaaact
tatgtgatggaaacaaatccttccgttatccgagatgcaatgcttcgtgagatagatcgc
ggaggtcaggtttactatatttacaataaagttgacactattgaacagaaagtgtctgaa
ttaaaagaattggttccagaagctactataggatacgtccatggacaaatgtcggagatc
caattagaaaatactctctatgcctttgtagagggtgagtatgatattctagtgaccaca
acaatcattgaaacaggtgttgatattcccaatgctaatacactgtttattgaaaatgca
gaccacatgggactgtcaactctttatcaacttagaggacgtgttggccgttccagtcgg
attgcctatgcctatctcatgtaccgtccagacaagtccttgacagaagtagctgaaaaa
cgcttggaagccattaagggctttacagaactaggatcaggtttcaagattgccatgcaa
gatttgtccattcgtggtgcgggaaatattttaggtgctgctcagtcaggttttattgat
tctgtgggatatgagatgtattcacaattgctggaacaagccatcttggaaaaacaaggc
aaggcgtctcagcgtcagaaaagcaacactgaggtcaatttacagattgatgcctattta
ccaagtgattatattggtgatcagcgacaaaaaattgaaatttacaagcgtataaagaat
attgacagtcgtgtcaactatcaagaattacaggaagaattgattgaccgttttggagag
tatcctgatgtagtagcctacttacttgaaatcggtctattgaagtcatttttagaccaa
gttttctgtcatacagttcttagacgacaacatcaagtgacagtaacattcgaacctatg
gctggtcaaattttcctaacgcaagattactttgaagctttatctgtgacaaatttgaaa
gctcagataacggaaaataaaggaaaactagctgttgtgtttaacattcaacagaaaaaa
gaatatgaaatattagaggaattgatttcttttgccgaaaaattaaaagaaattaaagca
aggaaggcagaataa
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integrated database retrieval system
