Streptomyces sp. RPA4-5: HEP86_18290
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Entry
HEP86_18290 CDS
T10325
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
srpa Streptomyces sp. RPA4-5
Pathway
srpa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
srpa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HEP86_18290 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
srpa03021
]
HEP86_18290 (rpoB)
03400 DNA repair and recombination proteins [BR:
srpa03400
]
HEP86_18290 (rpoB)
Enzymes [BR:
srpa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HEP86_18290 (rpoB)
Transcription machinery [BR:
srpa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HEP86_18290 (rpoB)
DNA repair and recombination proteins [BR:
srpa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HEP86_18290 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QIY56113
LinkDB
All DBs
Position
complement(4088423..4091908)
Genome browser
AA seq
1161 aa
AA seq
DB search
MAASRNASTANTNNGDSTAPLRISFAKIKEPLGVPNLLALQTESFDWLLGNAAWKGRVEA
ALESGQEVPTKSGLEEIFEEISPIEDFSGSMSLTFRDHRFEPPKNSIDECKERDFTYAAP
LFVTAEFTNNETGEIKSQTVFMGDFPLMTNKGTFCINGTERVVVSQLVRSPGVYFDSSID
KTSDKDIFSAKIIPSRGAWLEMEIDKRDMVGVRIDRKRKQSVTVLLKALGWTTEQILEEF
GEYESMRATLEKDHTQGQDDALLDIYRKLRPGEPPTREAAQTLLENLYFNPKRYDLAKVG
RYKVNKKLGGDEPLDAGVLTTDDVIATIKYLVKLHAGETETMGESGRSIVVETDDIDHFG
NRRLRNVGELIQNQVRTGLARMERVVRERMTTQDVEAITPQTLINIRPVVASIKEFFGTS
QLSQFMDQTNPLSGLTHKRRLSALGPGGLSRERAGLDVRDVHPSHYGRMCPIETPEGPNI
GLIGSLASYGRVNVFGFIETPYRKVVDGQVTEEVDYLTADEEDRFLIAQANAKLSEDMRF
SEQRVLVRRRGGEVDLVPADEVDFMDVSPRQMVSAATAMIPFLEHDDANRALMGSNMMRQ
AVPLIKAESPLVGTGMEYRCAVDAGDVIKAEKDGVVQEVSADYITVANDDGTYTTYRVAK
FTRSNQGTSFNQKVVVDEGARVIEGQVLADGPSTDEGEMALGKNLLVAFMPWEGHNYEDA
IILSQRLVQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVSEEVLSDLDERGIIRIGA
EVVAGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGEIGKVIGVRVFD
REEGDELPPGVNQLVRVYVAQKRKITDGDKLAGRHGNKGVISKILPVEDMPFLEDGTPVD
IILNPLGVPSRMNPGQVLEIHLGWLASQGWKVEGVEEEWKKRLHSISADEVAPGSNVATP
VFDGAREDEISGLFESTIPNRDGERMVKGSGKARLFDGRSGEPFPDPISIGYMYILKLHH
LVDDKLHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDD
VTGRVKVYEAIVKGENIPEPGIPESFKVLIKEMQSLCLNVEVLSSDGMSIEMRDTDEDVF
RAAEELGIDLSRREPSSVEEV
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
ttggccgcctcgcgcaacgcctcgactgccaatacgaacaacggcgacagcaccgccccg
ctgcgcatctcttttgcgaagatcaaggagcccctcggggttccgaacctccttgcgctg
cagaccgaaagcttcgactggctgctcggcaatgccgcatggaagggtcgcgtcgaggct
gcgctggagagtgggcaggaagtccccaccaagtccggtcttgaggagatcttcgaagag
atctccccgatcgaggacttctccgggtcgatgtcgctgacgttccgcgaccaccgcttc
gagcccccgaagaactccatcgacgagtgcaaggagcgcgacttcacgtacgcggctccg
ctcttcgtcaccgccgagttcaccaacaacgagaccggcgagatcaagtcccagacggtc
ttcatgggcgacttcccgctcatgacgaacaagggcaccttctgcatcaacggcaccgag
cgtgtcgtcgtctcgcagctggtgcgctcgccgggcgtgtacttcgacagctccatcgac
aagacgtccgacaaggacatcttctccgccaagatcatcccgtcccggggtgcctggctg
gagatggagatcgacaagcgcgacatggtcggtgtgcgcatcgaccgtaagcgcaagcag
tccgtcaccgtcctgctcaaggcgctcgggtggaccaccgagcagatcctcgaggagttc
ggcgagtacgagtccatgcgcgccaccctggagaaggaccacacccagggccaggacgac
gcgctgctcgacatctaccgcaagctgcgtcccggcgagccgccgacccgcgaggccgcg
cagacgctgctggagaacctgtacttcaaccccaagcgctacgacctcgcgaaggtcggc
cgctacaaggtcaacaagaagctcggtggcgacgagccgctcgacgccggtgtgctgacc
accgatgacgtcatcgcgacgatcaagtacctggtcaagctgcacgcgggcgagaccgag
acgatgggcgagtcgggccgttcgatcgttgtcgagaccgacgacatcgaccacttcggc
aaccgtcgtctgcgcaacgtcggcgagctcatccagaaccaggtccgcacgggtctggct
cgtatggagcgcgtcgtgcgtgagcgcatgacgacccaggacgtcgaggcgatcacgccg
cagaccctgatcaacatccggccggtcgtcgcctccatcaaggagttcttcggcaccagc
cagctgtcccagttcatggaccagaccaacccgctgtcgggtctgacccacaagcgccgt
ctgtcggcgctgggcccgggtggtctctcccgtgagcgggccggcctggacgtccgtgac
gtgcacccctcgcactacggccgcatgtgcccgattgagacccctgaaggtcccaacatc
ggtctgatcggttcgctggcctcttacggccgggtcaacgtcttcggcttcatcgagacg
ccgtaccgcaaggtcgtcgacggccaggtcacggaggaggtggactacctcaccgctgat
gaggaggaccgcttcctgatcgcccaggccaacgcgaagctctccgaggacatgcggttc
tccgagcagcgtgtcctggtccgccgtcgtggcggcgaggtcgacctcgtccccgccgac
gaggtggacttcatggacgtctcgccgcgccagatggtgtcggccgcgaccgccatgatt
ccgttcctcgagcacgacgacgccaaccgcgcgctcatgggatcgaacatgatgcgccag
gccgtgccgctgatcaaggcggagtcgccgctggtcggcaccggcatggagtaccgctgc
gcggtcgacgccggtgacgtcatcaaggccgagaaggacggtgtggtccaggaggtctcc
gcggactacatcaccgtcgccaacgacgacggcacgtacaccacgtaccgcgtcgccaag
ttcacccgctccaaccagggcacctccttcaaccagaaggtcgtcgtggacgagggcgcg
cgggtcatcgagggccaggtcctcgccgacggtccgtccacggacgaaggcgagatggcg
ctcggcaagaacctgctcgtggcgttcatgccgtgggagggtcacaactacgaggacgcg
atcatcctgtcgcagcgcctcgtgcaggacgacgtcctctcctcgatccacatcgaggag
cacgaggtcgacgcccgtgacaccaagctgggccccgaggagatcacccgggacatcccg
aacgtctccgaagaggtcctctccgacctcgacgagcgcggcatcatccgtatcggtgcc
gaggtcgtcgccggcgacatcctcgtcggcaaggtcacgcccaagggtgagaccgagctg
acccccgaggagcgcctgctccgcgcgatcttcggtgagaaggcgcgcgaggtgcgcgac
acctcgctgaaggtgccgcacggtgagatcggcaaggtcatcggcgtccgcgtcttcgac
cgcgaagagggcgacgagctgcccccgggcgtgaaccagctggtccgcgtctacgtcgcc
cagaagcgcaagatcaccgacggtgacaagctcgccggccgtcacggcaacaagggcgtc
atctcgaagatcctgccggtcgaggacatgccgttcctcgaggacggcaccccggtcgac
atcatcctcaacccgctgggtgtcccgtcccgaatgaacccgggacaggtcctggagatc
cacctcggctggctcgccagccagggctggaaggtcgagggtgtcgaggaggagtggaag
aagcgtctccactcgatctccgccgacgaggtcgcccccggctccaacgtcgccaccccg
gtgttcgacggtgcgcgcgaggacgagatctccggtctcttcgagtcgacgatccccaac
cgcgacggtgagcggatggtcaagggctccggtaaggcgcggctgttcgacggccgctcc
ggtgagccgttcccggacccgatctcgatcgggtacatgtacatcctcaagctgcaccac
ctggtcgacgacaagctccacgcgcgttcgaccggtccgtactcgatgatcacccagcag
ccgctgggtggtaaggctcagttcggtggccagcggttcggtgagatggaggtgtgggcg
ctggaggcatacggcgccgcatacgccctccaggagctgctgacgatcaagtccgacgac
gtgaccggccgcgtgaaggtctacgaggccatcgtcaagggcgagaacatccccgagccc
ggcattcccgagtccttcaaggtgctcatcaaggaaatgcagtccctgtgcctcaacgtg
gaggtgctgtcctcggacggcatgtccatcgagatgcgcgacaccgacgaggacgtcttc
cgcgctgcggaggagctcggcatcgacctgtcccggcgcgagccgagcagcgtcgaagag
gtctga
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integrated database retrieval system
