Streptomyces sp. RPA4-5: HEP86_29410
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Entry
HEP86_29410 CDS
T10325
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
srpa Streptomyces sp. RPA4-5
Pathway
srpa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srpa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HEP86_29410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srpa03019
]
HEP86_29410
03016 Transfer RNA biogenesis [BR:
srpa03016
]
HEP86_29410
Enzymes [BR:
srpa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HEP86_29410
Messenger RNA biogenesis [BR:
srpa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HEP86_29410
Transfer RNA biogenesis [BR:
srpa03016
]
Prokaryotic type
tRNA degradation factors
HEP86_29410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH-I_KHDC4-BBP
KH_2
KH_PNO1_2nd
KH_KhpA-B
CdsD_C
Motif
Other DBs
NCBI-ProteinID:
QIY57892
LinkDB
All DBs
Position
6565948..6568167
Genome browser
AA seq
739 aa
AA seq
DB search
MENETHYAEAVIDNGSFGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKKPKDQ
LDFFPLTVDVEERMYAAGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQI
VETIMALNPDHLYDVVAINAASCSTQLAGLPFSGPIGGTRVALINGQWVAFPTHTELEDA
VFDMVVAGRVLPDGDVAIMMVEAEATEKTVQLVKDGAEAPTEEVVAAGLEAAKPFIKVLC
KAQSDLAAKAAKPVGEFPVFLDYQDDVLEALTAAVKGELAQALTIAGKQDREAELDRIKE
IAAEKLLPQFEGREKEISGAYRALTKKLVRERVIKDKVRIDGRGVTDIRTLAAEVEAIPR
VHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSP
KRREIGHGALAERAIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVP
LKAPVAGIAMGLISQEIDGQTHYVALTDILGAEDAFGDMDFKVAGTKTFVTALQLDTKLD
GIPASVLAAALKQARDARLHILDVMNEAIDVPDEMSPNAPRIITVKIPVDKIGEVIGPKG
KMINQIQEDTGADITIEDDGTIYIGAADGPAAEAARATINGIANPTMPEVGERYLGTVVK
TTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVVAVGAKVQVEIAEIDQRGKLSL
IPVIEEEDAAEGTKDDAAK
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
gtggagaacgagacccactacgccgaagccgtgatcgacaacggctccttcggcacccgc
accatccgcttcgagacgggccgcctggccaagcaggccgccggttccgccgtggcgtac
ctggacgacgacaccatggtgctgtcggccaccaccgcttccaagaagcccaaggaccag
ctcgacttcttccccctgacggtggacgtcgaggagcggatgtacgcagccggcaagatc
cccggctccttcttccgtcgtgagggccggccctctgaggacgcgatcctcacctgccgc
ctgatcgaccgcccgctgcgcccctccttcaagaagggcctgcgcaacgagatccagatc
gtcgagacgatcatggccctcaaccccgaccacctctacgacgtggtcgccatcaacgcc
gcctcctgctccacgcagctggccggcctgcccttctccggcccgatcggcggcacccgt
gtcgcgctgatcaacggccagtgggtggcgttcccgacccacaccgagctcgaggacgcc
gtcttcgacatggtcgtggccggccgcgtcctcccggacggcgacgtcgcgatcatgatg
gtcgaggccgaggccaccgagaagaccgtccagctggtcaaggacggcgccgaggccccg
accgaagaggtcgtggccgccggtctcgaggccgccaagcccttcatcaaggtcctgtgc
aaggcccagtcggatctcgccgccaaggccgccaagcccgtcggcgagttcccggtcttc
ctcgactaccaggacgacgtcctggaggcgctgaccgccgccgtcaagggcgagctcgcc
caggcgctgaccatcgccggcaagcaggaccgcgaggccgagctggaccgcatcaaggag
atcgctgccgagaagctgctcccgcagttcgagggccgcgagaaggagatctccggtgcc
taccgcgcgctgaccaagaagctggtgcgcgagcgcgtcatcaaggacaaggtccgcatc
gacggccgtggcgtcacggacatccgtacgctcgccgccgaggtcgaggccatcccgcgg
gtgcacggttccgcgctgttcgagcgtggcgagacccagatcctgggcgtcaccaccctc
aacatgctccgcatggagcagcagctggacaccctctccccggtgacccgcaagcgctac
atgcacaactacaacttcccgccgtactccgtcggtgagaccggccgcgtgggctcgccc
aagcgccgcgagatcggccacggcgcgctcgccgagcgcgccatcgtgccggtcctgccg
acccgcgaggagttcccctacgcgatccgccaggtctccgaggcgctgggctccaacggc
tcgacgtccatgggctcggtctgcgcctccaccatgtcgctgctgaacgccggtgtgccc
ctcaaggccccggttgccggtatcgccatgggtctgatctcccaggagatcgacggccag
acccactacgtcgccctcaccgacatcctcggtgcggaggacgccttcggtgacatggac
ttcaaggtcgccggcacgaagaccttcgtgaccgccctccagctggacaccaagctggac
ggcatcccggcctccgtcctggccgccgcgctcaagcaggcccgcgacgcccgtctgcac
atcctcgatgtgatgaacgaggccatcgacgttccggacgagatgtccccgaacgccccg
cggatcatcaccgtcaagatcccggtggacaagatcggtgaggtcatcggccccaagggc
aagatgatcaaccagatccaggaggacaccggcgccgacatcacgatcgaggacgacggc
accatctacatcggtgccgccgacggcccggccgccgaggccgcccgcgccacgatcaac
ggcatcgccaacccgaccatgccggaggtcggcgagcgctacctgggcacggtcgtcaag
accaccaccttcggtgcgttcgtctccctgctcccgggcaaggacggcctgctccacatc
tcgcagatccgcaagctcgccggtggcaagcgtgtggagaacgtcgaggacgtggtcgcg
gtcggcgccaaggtccaggtcgagatcgccgagatcgaccagcgcggcaagctctccctg
atccccgtgatcgaggaagaggatgcggccgaaggcacgaaggacgacgccgccaagtga
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