Streptomyces sp. RPA4-2: HEP85_01925
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Entry
HEP85_01925 CDS
T10422
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
srpz Streptomyces sp. RPA4-2
Pathway
srpz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srpz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HEP85_01925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srpz03019
]
HEP85_01925
03400 DNA repair and recombination proteins [BR:
srpz03400
]
HEP85_01925
Enzymes [BR:
srpz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HEP85_01925
Messenger RNA biogenesis [BR:
srpz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HEP85_01925
DNA repair and recombination proteins [BR:
srpz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HEP85_01925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
DUF3553
HTH_IclR
MarR_2
AAA_30
HTH_20
MarR
PcrA_UvrD_tudor
Motif
Other DBs
NCBI-ProteinID:
QIY60676
UniProt:
A0A6H1K0V5
LinkDB
All DBs
Position
474948..476678
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AA seq
576 aa
AA seq
DB search
MRVKVGYFKTRSLRRRLRRCAREVFGWEVLRPSQLAAMTAVMAGRDTIVVMPTGAGKSAV
YQVPGVLLDGPTVVVSPLIALQRDQVAHLARIKGSGASAVNSAQRPRDNEAVWERVREGS
LDFLFVSPEQLAKDEVVEQIAAAAPALMVVDEAHCVSSWGYDFRPDYLSLCHVRERIGRP
PLLALTASAAAPVRADIVERLGMREAHEVVAGFDRRNITLEVVRHRENAGKRRWVVERAA
AEAKPGIVYAGTRREAEEYAQELSALGFDSAAYHAGLSAAERSRTHDRFRDGALDVVVAT
SAFGMGIDKPNIRFVLHASVPGSLDTYYQEIGRAGRDGEPSTAILAYRPEDLGVQRFRTG
AHPDPEVLGGLVDAVREQPGPVTVTSLRKRTGLSQPPLTSMLHLLEEAGAVTTEKRGGVR
AVPGARRDACVREAMRIASARVDLERSRVEMMRAYAETNGCRRRHMLGYFGESLTEGDCA
GCDTCTRTQELKEAPARTKDILSGTGPAPLEPVTADGSFPPGMRVGHTTWGEGEVMSEEG
NRITVLFESVGYRTLSLPAIRARGLLTPVSSTATRN
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgtcaaggtcggatacttcaagaccaggtcactcaggagacgactgcgccgctgt
gcccgtgaggtgttcggctgggaggtactccgaccgtcccaactcgccgccatgacagcc
gtgatggcggggcgcgacaccatcgtggtgatgccgacgggtgcggggaagtccgctgtg
taccaggtgccgggtgtgctgctggacggtcccaccgtcgtggtctcgcccctgatagcg
ctccagcgggaccaggtcgcccatctcgcccgcatcaagggatccggcgcctcggccgtc
aactccgcgcagcgcccacgggacaacgaggccgtgtgggagcgcgtacgcgaaggcagc
ctggacttcctgttcgtctcgcccgagcagctcgcgaaggacgaggtggtggagcagatc
gccgcggccgctcccgcgctgatggtggtcgacgaggcacactgcgtgtcctcgtgggga
tacgacttccggcccgactacctgtccctgtgccatgtgcgcgaacgcatcggccggccg
ccgctcctcgccctcaccgccagcgcggcggctcccgtacgggccgacatcgtggagcgg
ctcggcatgcgggaggcgcacgaggtggtcgccgggttcgaccgccgcaacatcacgctg
gaggtcgtacggcaccgggagaacgcggggaagcgccggtgggtggtggagcgggccgcg
gccgaggccaaaccgggcatcgtctacgcgggaacgcggcgggaggccgaggagtacgcg
caggagctgtcggcgctcggattcgacagcgccgcttaccacgcggggctgtcggcggct
gagcgctcccggacgcacgaccgcttccgggacggcgcactcgacgtggtcgtcgccacc
tccgcgttcggaatgggcatcgacaagccgaacatccgcttcgtgctgcacgcatcggtg
ccgggctccctcgacacctactaccaggagatcggccgggcgggccgcgacggagaaccg
tcgaccgcgatcctcgcgtaccggcccgaggacctcggcgtgcagcggttccggacgggc
gcgcaccccgaccctgaggtgctgggcgggctggtcgacgcggtgcgcgagcagccgggg
cccgtcacggtgaccagtctgcgcaaacgcaccgggctgtcccagccgccgctgacgtcg
atgctgcacctgctggaggaggccggagcggtgacaacggagaaacgcggcggtgttcgg
gccgtgccgggggcgcggcgggacgcctgcgtccgcgaggcgatgcggatcgcttccgcc
cgcgtcgacctggagcgttcccgggtggagatgatgcgggcgtacgcggagacgaacggt
tgtcgccgacgccacatgctcgggtacttcggtgagagtctgacggaaggcgactgcgcg
ggctgcgacacatgcacccgtacacaggagctgaaggaggcccccgcccggacaaaagac
atcctttccggtacgggtcctgccccactggaacccgtgacggccgacggctccttcccg
cccggcatgcgggtggggcacacgacgtggggcgagggcgaggtgatgagcgaagagggg
aacaggatcacggtcctgttcgagagcgtgggctatcgcacgctgtccctccccgccatc
cgggcccggggcctgctgacgccggtgtcatccaccgcgacgaggaactga
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