Streptomyces sp. RPA4-2: HEP85_15245
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Entry
HEP85_15245 CDS
T10422
Name
(GenBank) ATP-dependent RecD-like DNA helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
srpz Streptomyces sp. RPA4-2
Pathway
srpz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
srpz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HEP85_15245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srpz03400
]
HEP85_15245
Enzymes [BR:
srpz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
HEP85_15245
DNA repair and recombination proteins [BR:
srpz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HEP85_15245
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
HHH_RecD2
AAA_30
OB_YrrC
UvrD_C_2
SH3_13
Viral_helicase1
AAA_11
HHH_5
AAA_22
PIF1
NAT10_TcmA_helicase
AAA_16
TraI_hel_assoc_N
NPHP3_N
HTH_IclR
nSTAND3
PhoH
AAA
TrwB_AAD_bind
DEAD
UvrD_C
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
QIY62761
LinkDB
All DBs
Position
complement(3472672..3474960)
Genome browser
AA seq
762 aa
AA seq
DB search
MSKQEGTGARQQAVLEGVLERITYANEESGYTVARVDTGRGAGDLLTVVGALLGAQVGES
LRMEGRWGSHQQYGKQFTVENYTTVLPATVQGIRRYLGSGLVKGIGPVFADRITQHFGLD
TLRIIEEEPKRLIEVPGLGPKRTKKIADAWEEQKAIKEVMLFLQSVEVSTSIAVRIYKKY
GDASISVVRNQPYRLAADVWGIGFLTADRIAQSVGIPHDSPERVKAGLQYALSQSTDQGH
CYLPEERLIADAVKLLQVDTGLVIECLAELAAPPEGDVEPGVVREKVPGPDGGEPVTAVY
LVPFHRAELSLSAQLLRLLRTDQDRMPGFRDVAWDKALTWLEGRTGAELAPEQEEAVRLA
LTRKVAVLTGGPGCGKSFTVRSIVELARARRAKVVLAAPTGRAAKRLAELTGAEASTVHR
LLELKPGGDAAYDKDRPLDADLVVVDEASMLDLLLANKLAKAVPPGAHLLFVGDVDQLPS
VGAGEVLRDLLAEGGPVPSVRLTRIFRQAQQSGVVTNAHRINSGQHPVTDGLKDFFLFVE
DDTEETGRLTVDVVARRIPAKFGLDPRRDVQVLAPMHRGPAGAGTLNGLLQQAITPARPE
LAEKRFGGRVFRVGDKVTQIRNNYEKGENGVFNGTVGVVTSLDPVEQRLTVLTDEDEEVP
YDFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKKLVVLVG
SRKAIGQAVRTVSAGRRCTALSFRLGGRPLSHAPAPEPAHRP
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagcaggaggggaccggggcacggcagcaggccgtcctcgaaggcgtgctggag
cggatcacctacgcgaacgaggagagcggctacacggtcgcgcgggtggacaccggccgc
ggcgcgggggacctgctgaccgtcgtcggcgcgctgctcggcgcgcaggtcggcgagtcg
ctcaggatggagggccgctggggctcccaccagcagtacggcaagcagttcacggtggag
aactacacgacggtcctcccggccaccgtccagggcatccgccgctacctcggttccggc
ctggtcaagggcatcggcccggtcttcgccgaccgcatcacccagcacttcgggctggac
acgctccggatcatcgaggaggagccgaagcggctcatcgaggtccccggcctcggcccg
aagcggacgaagaagatcgccgacgcctgggaggagcagaaggcgatcaaggaggtcatg
ctcttcctccagagcgtcgaggtgtcgacgtcgatcgcggtgcgcatctacaagaagtac
ggcgacgcatcgatctccgtcgtgaggaaccagccctaccggctcgccgccgacgtctgg
ggcatcggcttcctcaccgccgaccggatcgcccagtccgtcggcatcccgcacgacagc
ccggagcgcgtcaaggcgggcctccagtacgccctttcgcagtccaccgaccaggggcac
tgctatctcccggaggagcggctgatcgcggacgcggtgaagctcctccaggtggacacg
ggcctggtcatcgagtgcctggccgaactcgcggctcccccggagggcgacgtggagccc
ggtgtcgtacgggagaaggtgcccggtcccgacggcggtgagccggtgacggccgtctat
ctggtgcccttccaccgcgccgaactgtccctctccgcacagctgttgcgcctgctgcgc
accgaccaggaccggatgcccggcttccgggacgtggcctgggacaaggcgctgacctgg
ctcgaggggcgtacgggcgcggagttggcgcccgagcaggaggaggccgtgcggctggcg
ctgaccaggaaggtcgccgtgctcaccggaggccccggctgcggcaagtcgttcacggtc
cgctcgatcgtggaactggcgcgcgccaggcgggcgaaggtggtcctcgccgcgcccacg
ggccgcgcggccaagcggctcgccgagctgacgggggccgaggcctcgacggtgcaccgg
ctgctggagctgaagccgggcggggacgcggcgtacgacaaggaccggccgctggacgcc
gacctggtggtcgtggacgaggcctccatgctcgacctgctgctcgccaacaagctggcc
aaggcggtgccgccgggcgcccacctcctgttcgtgggagacgtcgaccaactccccagc
gtgggcgcgggcgaggtcctgcgggacctgctcgccgagggcggccccgtcccgtcggtc
cggctgacccggatcttccgccaggcccagcagtccggggtggtgacgaacgcccaccgg
atcaactccgggcagcacccggtcaccgacggcctgaaggacttcttcctcttcgtcgag
gacgacaccgaggagaccgggcggctgacggtggacgtggtggcacggcggattccggcc
aagttcgggctcgacccgcgccgtgacgtgcaggtgctggcgccgatgcaccgggggccg
gccggcgcgggcaccctcaacggcctgctccagcaggcgatcacgcccgcgcgccccgag
ctcgccgagaagcgcttcggcggccgggtcttccgcgtcggcgacaaggtcacccagatc
cgcaacaactacgagaagggcgagaacggtgtcttcaacggcaccgtgggcgtcgtgacc
tcgctcgatccggtcgaacagcgtctgacggtgctgacggacgaggacgaggaggtgccg
tacgacttcgacgaactggacgagctggcccacgcgtacgcggtgacgatccaccgttcc
cagggcagcgagtaccccgcggtggtgatcccggtcaccacgggggcctggatgatgctc
cagcgcaacctcctctacacggcggtcacccgggccaagaagctggtcgtcctcgtcggc
tcccgcaaggcgatcggccaggccgtccgcacggtgtcggccggccggcgctgtacggcc
ctgtccttccgtctcgggggccgccccttgtcccacgcgcccgctccggagccggcccac
cggccctga
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