Streptomyces sp. RPA4-2: HEP85_23540
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Entry
HEP85_23540 CDS
T10422
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
srpz Streptomyces sp. RPA4-2
Pathway
srpz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srpz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HEP85_23540 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srpz03019
]
HEP85_23540 (recQ)
03400 DNA repair and recombination proteins [BR:
srpz03400
]
HEP85_23540 (recQ)
Enzymes [BR:
srpz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HEP85_23540 (recQ)
Messenger RNA biogenesis [BR:
srpz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HEP85_23540 (recQ)
DNA repair and recombination proteins [BR:
srpz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HEP85_23540 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
QIY67516
UniProt:
A0A6H1KKB7
LinkDB
All DBs
Position
5328387..5330366
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AA seq
659 aa
AA seq
DB search
MGGTGVMTEADATEKLGEGEALATLHRVFGYDAFRGEQEAIIEHVVAGGDAVVLMPTGGG
KSLCYQIPSLVRPGTGVVVSPLIALMQDQVDALRALGVRAGFMNSTQDFDERRVVEAELL
AGELDLLYLAPERLRLDSTLDLLSRAKISVFAIDEAHCVAQWGHDFRPDYLALSLLGERW
PDVPRLALTATATHATHKEITQRLAMPHARHFEASFDRPNIQYRIVPKADPKKQLLSFLR
EEHAGDAGIVYCLSRNSVEKTAEFLSRNGVEAVPYHAGLDAGTRAAHQSRFLREEGLVVV
ATIAFGMGIDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGQPSTAWMAYGLQDVVQQRKL
IQGSEGDEAFRRRAAAHLDSMLALCETAQCRRSQLLAYFGQDPHTPACGNCDTCLTPPET
WDGTVAAQKLLSTVVRLQRERGQKFGALQIVDILLGRRTAKVIQFDHDQLSVFGIGEDLS
EPEWRGVVRQLLAQGLLAVEGEYGTLVLTEESGTVLRRERDVPLRKEQPKPATSRSSASP
RGERKAKAVVELPQELVPAFEALRAWRAEQAKEQGVPAYVIFHDATLREIATVWPTSVAD
LGGISGVGEKKLATYGAGVVGVLAALGGAPGGAPAPAADEAPDPDWPEMDAEPEPEDWM
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgggcgggacgggtgtgatgaccgaagcggacgcgacggagaagctgggggagggcgag
gcactggccacgctccaccgggtcttcgggtacgacgccttccgcggcgagcaggaagcg
atcatcgagcacgtggtggcgggcggtgacgccgtcgtcctgatgccgacgggtggcggc
aagtcactctgctatcagattccgtccctggtcagaccgggcacgggcgtggtcgtctcg
ccgctcatcgccctgatgcaggaccaggtggacgcactgcgcgcgctgggcgtgcgcgcc
ggcttcatgaactccacgcaggacttcgacgagcgccgcgtcgtcgaggccgagctgctg
gcgggcgagcttgacctgctctacctggccccggagcggctgcgcctggacagcacactg
gacctgctgtcgcgggcgaagatctccgtcttcgcgatcgacgaagcgcactgcgtggcc
cagtggggtcacgacttccgccccgactacctggcactctcgctgctcggcgagcgctgg
ccggacgtcccgcgcctcgcgctgacggccacggccacacacgcgacgcacaaggagatc
acccagcgcctggccatgccgcacgcgcgccacttcgaggcgagcttcgaccggcccaac
atccagtaccggatcgtcccgaaggccgaccccaagaagcagctgctgtcgttcctgcgc
gaggagcacgcgggcgacgcgggcatcgtgtactgcctctcgcgcaactcggtcgagaag
accgccgagttcctctcccgcaacggcgtcgaggcggtgccgtaccacgcgggcctggac
gcgggcacccgcgccgcgcaccagtcgcgcttcctgcgcgaagagggcctggtcgtcgtc
gccacgatcgccttcggcatgggcatcgacaaacccgacgtgcggttcgtcgcccacctc
gacctgcccaagtcggtggaggggtattaccaggagacgggccgcgcgggccgcgacgga
cagccgtccacggcatggatggcgtacggcctgcaggacgtcgtgcagcagcgcaagctg
atccagggctccgagggcgacgaggcgttccgccggcgggccgcagcccacctggactcg
atgctggcgctgtgcgagacggcccagtgccggcgttcccagctgctggcctacttcggc
caggacccgcacaccccggcgtgcggcaactgcgacacctgcctgacgccgcccgagacc
tgggacggcacggtcgcggcgcagaagctgctgtcgacggtggtgcggttgcagcgggag
cgcgggcagaagttcggcgcgctccagatcgtcgacatcctgctggggcgccggaccgcc
aaggtgatccagttcgaccacgaccagctgtccgtgttcggcatcggcgaggatttgtcg
gagcccgaatggcgcggtgtcgtacggcagttgctcgcgcaggggctgctcgccgtcgag
ggcgagtacgggacactggtgctgaccgaggagagcgggacggtgctgaggcgcgagcgc
gacgtgccgttgcgcaaggagcagccgaagccggccacctcccgttcctccgcgtcgccc
cggggcgaacgcaaggccaaggccgttgtggagctgccgcaggaactcgtccccgccttc
gaggccctgcgagcgtggcgtgccgagcaggccaaggaacagggcgtcccggcgtacgtc
atcttccacgacgccacgctccgggagatcgcgacggtgtggcccacctccgtggcggac
ctcgggggtatcagcggggtgggcgagaagaagctcgcgacgtacggcgcgggcgtggtc
ggggtgctcgccgccctgggcggcgcccccggaggggcgccggctcccgcggccgacgag
gcgccggacccggactggccggagatggacgcggagccggagccggaggactggatgtag
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