Streptomyces sp. RPA4-2: HEP85_28455
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Entry
HEP85_28455 CDS
T10422
Symbol
rnc
Name
(GenBank) ribonuclease III
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
srpz Streptomyces sp. RPA4-2
Pathway
srpz03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
srpz00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
HEP85_28455 (rnc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srpz03019
]
HEP85_28455 (rnc)
03009 Ribosome biogenesis [BR:
srpz03009
]
HEP85_28455 (rnc)
03036 Chromosome and associated proteins [BR:
srpz03036
]
HEP85_28455 (rnc)
Enzymes [BR:
srpz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
HEP85_28455 (rnc)
Messenger RNA biogenesis [BR:
srpz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HEP85_28455 (rnc)
Ribosome biogenesis [BR:
srpz03009
]
Eukaryotic type
90S particles
RNase
HEP85_28455 (rnc)
Prokaryotic type
rRNA processing factors
HEP85_28455 (rnc)
Chromosome and associated proteins [BR:
srpz03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
HEP85_28455 (rnc)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonucleas_3_3
Ribonuclease_3
dsrm
RM44_endonuclase
DSRM_2
DND1_DSRM
Motif
Other DBs
NCBI-ProteinID:
QIY64829
LinkDB
All DBs
Position
6418798..6419655
Genome browser
AA seq
285 aa
AA seq
DB search
MSDAKAEPNAKKKAENTASSHTLLEGRLGYKLESALLVRALTHRSYAYENGGLPTNERLE
FLGDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEE
GTGGRDKASILADTLEAVIGAVYLDQGLEAAGELVHRLFDPLIEKSSNLGAGLDWKTSLQ
ELTATEGLGVPEYLVSETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWRAI
RSAADERAKSAQAAEQVAQAAQQAAQAAEEATEAPSAPTSDPATA
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacgccaaggcggaacctaacgccaagaaaaaggcggagaacacagcctcgtcc
cacacgcttctggaagggcggctcgggtacaagctcgagtccgcccttctggtgcgtgcg
ctgacccaccgttcctacgcgtacgagaacggcggtctgccgaccaacgagcggctggag
ttcctcggggactccgtgctcggcctcgtggtcacggacacgctgtaccgcacccacccc
gacctgcccgaaggccagctggccaagttgcgggccgcggtggtcaactcgcgtgcgctg
gcggaagtgggccgcggcctcgaactcggctccttcatccggctcggccggggcgaggaa
ggcacgggaggccgggacaaggcatccatcctcgccgacacccttgaagcggtgatcggc
gcggtctatctcgaccagggtctggaagcggcgggcgaactcgtccaccggctcttcgac
ccgttgatcgagaagtcctcgaacctcggtgccggcctggactggaagaccagtctccag
gagctcaccgcgaccgaggggctcggcgtacccgagtacctggtctcggagaccggcccc
gaccacgagaagacctttactgctgccgcccgcgtcggaggcgtctcgtacggcaccggc
accggccgcagcaagaaggaggcggagcagcaggccgcggagtccgcgtggcgtgcgatc
cgctccgccgcggacgagcgcgcgaagtcggcccaggccgccgagcaggtggctcaggcc
gctcagcaggcagcccaggccgccgaggaggccaccgaggctccctcggctccgaccagc
gatccggccacggcctga
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