Streptomyces sp. RPA4-2: HEP85_29130
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Entry
HEP85_29130 CDS
T10422
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
srpz Streptomyces sp. RPA4-2
Pathway
srpz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srpz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HEP85_29130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srpz03019
]
HEP85_29130
03016 Transfer RNA biogenesis [BR:
srpz03016
]
HEP85_29130
Enzymes [BR:
srpz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HEP85_29130
Messenger RNA biogenesis [BR:
srpz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HEP85_29130
Transfer RNA biogenesis [BR:
srpz03016
]
Prokaryotic type
tRNA degradation factors
HEP85_29130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH-I_KHDC4-BBP
KH_2
KH_PNO1_2nd
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
QIY64931
LinkDB
All DBs
Position
6575932..6578151
Genome browser
AA seq
739 aa
AA seq
DB search
MENETHYAEAVIDNGSFGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKKPKDQ
LDFFPLTVDVEERMYAAGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQV
VATIMALNPDHLYDVVAINAASASTQLAGLPFSGPVGGVRVALINGQWVAFPTHTELEDA
VFDMVVAGRVLEDGDVAIMMVEAEATDKTIQLVKGGAEAPTEEVVASGLDAAKPFIKVLC
KAQSDLAAKAAKPTGEFPIFLDYQDDVFEALTAAVKSELAQALTIAGKQDREAELDRVKE
IAAEKLLPQFEGREKEISAAYRALTKKLVRERVIKDKVRIDGRGVTDIRTLAAEVEAIPR
VHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSP
KRREIGHGALAERAIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVP
LKAPVAGIAMGLISQEIDGQTHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLD
GIPASVLAAALKQARDARLHILDVMMEAIDTPDEMSPNAPRIITVKIPVDKIGEVIGPKG
KMINQIQEDTGAEITIEDDGTIYIGASDGPAAEAARATINGIANPTMPEVGERYLGTVVK
TTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGKLSL
IPVVEGEGDDDDKKDDTDQ
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
gtggagaacgagacccactacgccgaggccgttatcgacaacggttccttcggcacccgc
accatccgcttcgagacgggccggctggccaagcaggccgccggttccgccgtggcgtac
ctggacgacgacaccatggtgctgtcggccaccaccgcttccaagaagcccaaggaccag
ctcgacttcttccccctcacggtggacgtcgaggagcggatgtacgccgccggcaagatc
cccggcagcttcttccgccgcgagggccggccctccgaggacgcgatcctcacctgccgc
ctgatcgaccgcccgctgcgcccgtccttcaagaagggccttcgcaacgagatccaggtc
gtcgccacgatcatggcgctcaaccccgaccacctgtacgacgtcgtggcgatcaacgcc
gcctccgcgtccacccagctggccggtctgcccttctccggcccggtcggcggcgtccgc
gtcgcgctgatcaacggccagtgggtcgcgttcccgacgcacaccgagctcgaggacgcc
gtcttcgacatggtcgtcgccggtcgcgtcctggaggacggcgacgtcgcgatcatgatg
gtcgaggccgaggccaccgacaagacgatccagctggtcaagggcggcgccgaggcgccc
accgaggaggtcgtggcctccggcctcgacgccgcgaagcccttcatcaaggtcctgtgc
aaggcgcagtcggacctcgccgccaaggccgccaagcccaccggcgagttcccgatcttc
ctggactaccaggacgacgtcttcgaggcactgaccgccgcggtcaagagcgagctcgcc
caggcgctcaccatcgccggcaagcaggaccgcgaggccgagctggaccgcgtcaaggag
atcgccgccgagaagctgctcccgcagttcgagggtcgcgagaaggagatctccgccgcg
taccgcgcgctgaccaagaagctggtccgcgagcgcgtcatcaaggacaaggtccgcatc
gacggccgtggcgtcacggacatccgtacgctcgccgccgaggtcgaggccatcccgcgc
gtgcacggctcggcgctgttcgagcgtggcgagacccagatcctgggcgtcaccaccctc
aacatgctccgcatggagcagcagctggacaccctctccccggtgacccgcaagcgttac
atgcacaactacaacttcccgccgtactccgtcggtgagacgggccgcgtcggctccccg
aagcgccgcgagatcggccacggcgcgctcgccgagcgcgcgatcgtgccggtcctgccg
acccgcgaggagttcccctacgcgatccgtcaggtgtccgaggccctcggctccaacggc
tcgacgtccatgggctcggtctgcgcctccaccatgtcgctgctgaacgccggtgtgccc
ctcaaggcccccgtcgccggtatcgccatgggcctgatctcccaggagatcgacggccag
acgcactacgtcgccctcaccgacatcctcggtgcggaggacgccttcggcgacatggac
ttcaaggtcgccggcaccaaggagttcgtcaccgccctccagctcgacaccaagctggac
ggcatcccggcctccgtcctggccgcggccctcaagcaggcccgcgacgcccgcctccac
atcctcgacgtgatgatggaagcgatcgacacgccggacgagatgtccccgaacgccccg
cggatcatcaccgtcaagatccccgtggacaagatcggtgaggtcatcggccccaagggc
aagatgatcaaccagatccaggaggacaccggcgccgagatcacgatcgaggacgacggc
accatctacatcggtgcctccgacggcccggccgccgaggccgcccgcgccacgatcaac
ggcatcgccaacccgaccatgccggaggtcggcgagcgctacctgggcaccgtcgtgaag
acgacgaccttcggcgcgttcgtgtcgctgctcccgggcaaggacggtctgctgcacatc
tcgcagatccgcaagctcgccggcggcaagcgcgtggagaacgtcgaggacgtcctcggt
gtgggccagaaggtccaggtcgagatcgccgagatcgactcccgcggcaagctctccctc
atccccgtggtcgagggcgaaggcgacgacgacgacaagaaggacgacaccgaccagtga
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