Streptomyces sp. RPA4-2: HEP85_29230
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Entry
HEP85_29230 CDS
T10422
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
srpz Streptomyces sp. RPA4-2
Brite
KEGG Orthology (KO) [BR:
srpz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
srpz03009
]
HEP85_29230 (rimO)
Enzymes [BR:
srpz01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
HEP85_29230 (rimO)
Ribosome biogenesis [BR:
srpz03009
]
Prokaryotic type
ribosomal protein modification factors
HEP85_29230 (rimO)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM_2
TRAM
YajR_YAM
Motif
Other DBs
NCBI-ProteinID:
QIY64944
UniProt:
A0A6H1KQU6
LinkDB
All DBs
Position
6606470..6607945
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AA seq
491 aa
AA seq
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MPERRTVALVTLGCARNEVDSEELAGRLEADGWQLVEDAEDADVAVVNTCGFVEAAKKDS
VDALLEANDLKGQGRTQAVVAVGCMAERYGKELAQALPEADGVLGFDDYADISDRLQTIL
NGGIHASHTPRDRRKLLPISPAERQSAGEDVALPGHGAPSDLPEGVAPVSGPRAPLRRRL
DGSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLNETRWLAEQGVKEVMLVSENN
TSYGKDLGDIRLLETMLPELAEIDGIERVRVSYLQPAEMRPGLIDVLTSTPNIAPYFDLS
FQHSAPDVLRSMRRFGDTDRFLELLDTIRSKAPQAGVRSNFIVGFPGESETDLAELERFL
THARLDAIGVFGYSDEEGTEAATYENKLDEDVVADRLARVSRLAEELVAQRAEERVGETV
QVLVESLDDEDGAYGRAAHQAPETDGQVLFTSGEGLTVGRIVEAKVVGTEGVDLVAEPLP
GSLPGTEEAGR
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacgccgtaccgtcgcactcgtcactcttggctgcgcccgtaacgaggtggac
tcggaggagctcgcaggccgcttggaggcggacggctggcaactcgtggaggacgccgag
gacgcggatgtcgccgtcgtcaacacctgtggcttcgtcgaggccgccaagaaggactcc
gtcgacgccctcctcgaagccaatgacctcaagggccagggcagaacccaggccgtcgtg
gcggtgggctgcatggccgagcggtacggcaaggagctcgcccaggccctgcccgaggcc
gacggcgtgctcggcttcgacgactacgccgacatctccgaccgcctccagaccatcctg
aacggcgggatccacgcctcgcacaccccccgcgaccggcgcaagctgctgccgatcagc
ccggccgagcggcagagcgccggcgaggacgtggcccttcccggtcacggcgccccctcg
gacctaccggagggcgtggccccggtgtccggcccccgcgcaccgctgcgccgccgtctg
gacggctcgccggtcgcctcggtgaagctcgcctccggctgtgaccggcgctgctccttc
tgcgccatcccgtccttccgcgggtccttcatctcccggcgccccagcgacgtgctgaac
gagacccgctggctggccgagcagggcgtcaaggaggtcatgctggtctccgagaacaac
acctcgtacggcaaggacctcggcgacatccgcctgctggagacgatgctgcccgagctg
gccgagatcgacggcatcgagcgggtgcgggtcagctatctgcagcccgccgagatgcgc
cccgggctcatcgacgtcctcacctcgacgccgaacatcgcgccctacttcgacctctcc
ttccagcactccgcgcccgacgtgctgcgctcgatgcgccgcttcggcgacaccgaccgc
ttcctcgagctgctcgacacgatccgctccaaggcaccgcaggccggtgtgcggtccaac
ttcatcgtgggcttccccggggagagcgaaaccgacctcgcggagctggagcggttcctc
acccacgcgcgtctcgacgcgatcggcgtcttcgggtactccgacgaggagggcacggag
gcggcgacgtacgagaacaagctggacgaggacgtcgtcgccgaccgcctcgcgcgggtg
tcccggctcgccgaggaactggtcgcgcagcgcgcggaggagcgcgtcggcgagaccgta
caggtgctggtggagtcgctcgacgacgaggacggcgcgtacggccgcgccgcgcaccag
gcgcccgagacggacggacaggtgctgttcacgagcggcgaaggtctgaccgtcggccgt
atcgtcgaggccaaggtggtcggtacggaaggtgtggacctggtggccgagccgctcccg
ggttcgctccccggtactgaggaggcgggcagatga
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