Streptomyces sp. RPA4-2: HEP85_34070
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Entry
HEP85_34070 CDS
T10422
Name
(GenBank) Fpg/Nei family DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
srpz Streptomyces sp. RPA4-2
Pathway
srpz03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
srpz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HEP85_34070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srpz03400
]
HEP85_34070
Enzymes [BR:
srpz01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
HEP85_34070
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
HEP85_34070
DNA repair and recombination proteins [BR:
srpz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
HEP85_34070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Zn_ribbon_TFIIB
NFACT_N
Zn_ribbon_8
Zn_ribbon_RRN7
Motif
Other DBs
NCBI-ProteinID:
QIY65684
UniProt:
A0A6H1KSX6
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All DBs
Position
7743752..7744612
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AA seq
286 aa
AA seq
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MPELPEVEALKDFLADHLVGREVVRVLPVAISVLKTYDPPVTAFEGREVTAVRRLGKFLD
IEADGLHFVTHLARAGWLQWRDPLPDGPPRPGKGPLALRVALANGEGFDLTEAGTQKRLA
VHVVRDPQEISGVARLGPDPLAADFDEARFAGLLEGERRRLKGALRDQSLIAGVGNAYSD
EILHAARMSPFKLASSLTPEETGRLYEALRGTLTEAVERSHGLAAGRLKREKKSGLRVHG
RAGEPCPVCGDTIREVSFSDSSLQYCPTCQTGGKPLADRRMSRLLK
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atgccggaactgccagaggtcgaagcgctcaaggacttcctggccgaccatctcgtcggc
cgcgaggtcgtgcgcgtgctgcccgtcgcgatcagtgtcctgaagacctacgacccgccc
gtcaccgccttcgagggccgcgaggtcaccgcggtgcgccggctgggcaagttcctcgac
atcgaggccgacggcctgcacttcgtgacgcacctggcccgcgcgggctggctgcagtgg
cgggacccgttgcccgacggcccgcccagaccgggcaagggcccactggcgctgcgcgtc
gccctggcgaacggcgagggcttcgacctcaccgaggcgggcacccagaagagactcgcc
gtgcatgtggtccgggacccgcaggagatctccggcgtggcgcgcctcggccccgacccg
ctcgccgccgacttcgacgaggcacggttcgcggggctgctcgagggggagcggcgccgg
ctcaagggcgccctgcgggaccagagcctgatcgccggcgtggggaacgcgtacagcgac
gagatcctgcacgccgccaggatgtccccgttcaagctcgcctcctcactgacgcccgag
gagacaggccggctgtacgaggcgctgcgcgggacgctcaccgaggcggtggagcgctcc
cacgggctggccgcgggtcgtctcaagagggagaagaagagcgggctgcgggtgcacggc
agggcgggcgagccctgtccggtgtgcggcgacaccatccgtgaggtctccttcagcgat
tcctcgctgcagtactgcccgacctgtcagacgggaggcaagcctctggccgaccggcgg
atgtcccggctgctcaaatag
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