Serratia plymuthica AS9: SerAS9_0154
Help
Entry
SerAS9_0154 CDS
T01503
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
srr
Serratia plymuthica AS9
Pathway
srr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SerAS9_0154
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srr03019
]
SerAS9_0154
03400 DNA repair and recombination proteins [BR:
srr03400
]
SerAS9_0154
Enzymes [BR:
srr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SerAS9_0154
Messenger RNA biogenesis [BR:
srr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SerAS9_0154
DNA repair and recombination proteins [BR:
srr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SerAS9_0154
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
DUF6972
Motif
Other DBs
NCBI-ProteinID:
AEF43316
LinkDB
All DBs
Position
179661..181517
Genome browser
AA seq
618 aa
AA seq
DB search
MQQKVGKCVSTAAVINKELLAEQVLRDTFGYQQFRPGQQTIINAAIGGLDCLVVMPTGGG
KSLCYQIPALVMDGLTLVVSPLISLMKDQVDQLLAYGVSAACYNSTQTREQQLEVMAGCR
SGQIKMLYIAPERLMMDSFLDLLDHCPPALLAVDEAHCISQWGHDFRPEYRALGQLKQRF
PTMPVIALTATADESTRGDIVRLLALHDPLVQISSFDRPNIRYTLVEKFKPLDQLWRFVQ
DQRGKSGIIYCNSRAKVEDTTARLQSRGLSVGAYHAGLDNDRRSQVQEAFQRDDLQVVVA
TVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAILLYDPADMAWLRRCL
EEKPAGQQLDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGKQQNCGNCDICLDPPKRYDG
LEDARKALSCVYRVGQRFGLGYIVEVLRGSNNQRIREYGHDKLPVYGIGREQTTEHWTSV
LRQLIHLGFITQNIAMHSALQLTEAARPVLRGELELQLAVPRIQSLKSRGSANQKSYGGN
YDRKLFAKLRKLRKSIADEENIPPYVVFNDATLLEMAEQMPIKAGDLLSVNGVGQRKLER
FGAPFMAMIRDHLDNDEE
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgcagcaaaaagtggggaagtgtgtgtcaaccgcagcagtgataaacaaagagttgctg
gcagagcaggtattgcgcgatacctttggctaccagcaattccgaccgggtcaacaaacg
attatcaacgcggcgatcggcgggctggattgtctggtggtcatgccgaccggcggcggt
aaatcgttgtgctatcaaatcccggcgctggtgatggatggcctgacgttagtggtttcc
ccgctgatctccctgatgaaagatcaggtcgatcaactgctggcttatggcgtttccgcc
gcctgctataactcgacgcagacgcgcgagcagcaactggaggtcatggcgggttgccgc
agcgggcagatcaaaatgctgtatatcgcccccgaacggctgatgatggacagcttcctc
gatctgctcgaccactgtccgccggcgctattggcggtggacgaggcgcactgtatttcg
cagtggggccatgatttccgtcctgaataccgcgcgttgggtcagttgaagcagcgcttc
ccgacgatgccggtgattgccctgaccgctaccgccgacgagtctacccggggcgacatc
gtacgcctgttggcgctgcacgatccgctggtgcagatcagcagctttgaccgcccaaac
attcgctatacgttggtggagaagttcaaaccgctcgatcagctgtggcgcttcgtgcag
gaccaacgtggcaagagcggtatcatttactgcaacagccgcgccaaggtggaagacacc
acggcgcgtttgcagagccgcggtctgagcgtaggtgcctatcatgccgggctggacaac
gatcgccgctcacaggtgcaggaagcgttccagcgtgacgatttacaggtggtggtagcc
accgtcgccttcggcatgggcatcaacaaacccaacgtgcgtttcgtggtgcactttgat
atcccgcgcaatatcgagtcctactatcaggaaaccggccgcgccgggcgtgatggcctg
ccggcagaagcgatcctgttgtatgacccggccgacatggcctggctgcgccgttgtctg
gaagagaaaccggccgggcaacagctggatatcgaacgccacaagctgaacgccatgggg
gctttcgccgaagcgcaaacctgccgtcgtttggtgttgctcaattactttggcgagggc
aagcagcaaaattgcggtaactgcgatatctgcctcgatccccccaagcgctatgacggg
ctggaagacgcgcgcaaggcgctctcctgcgtgtatcgcgtcggccagcggttcggcctg
ggttatattgtcgaagtgctgcgcggttccaataaccaacgcatccgcgaatacgggcac
gacaagttgccggtgtacggcatcggtcgcgagcaaacgaccgaacactggaccagcgtg
ctgcgtcaactgatccacctggggtttattacccagaacatcgccatgcattcggcgctg
caattgaccgaggccgcgcgcccggtactgcgtggtgaactggagctgcaactggcggtg
ccgcgcatccaaagtctgaagtcgcgtggcagcgccaatcagaaatcctacggcggcaat
tacgatcgcaaactgtttgccaaactgcgcaagctgcgtaaatcgattgccgacgaagaa
aatatcccgccttacgtggtgtttaacgatgccacgctattggaaatggcggagcaaatg
ccgatcaaggccggcgacctgcttagcgttaacggcgttggccagcgcaaactggagcgt
ttcggcgccccgtttatggcgatgatccgcgatcacctcgataatgacgaagaataa
DBGET
integrated database retrieval system
