Serratia plymuthica AS9: SerAS9_0235
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Entry
SerAS9_0235 CDS
T01503
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
srr
Serratia plymuthica AS9
Pathway
srr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
srr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SerAS9_0235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
srr03021
]
SerAS9_0235
03400 DNA repair and recombination proteins [BR:
srr03400
]
SerAS9_0235
Enzymes [BR:
srr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SerAS9_0235
Transcription machinery [BR:
srr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SerAS9_0235
DNA repair and recombination proteins [BR:
srr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SerAS9_0235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AEF43397
LinkDB
All DBs
Position
272515..276738
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEAECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLSGPKEAERIYRAG
LASLHARVKVRITEEIKNTEGESVHQTSIIDTTVGRAILWMIVPKGLPYAIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPAKKAEIIEEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSVEDVVNRDGVVEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHNGITMTPVIEGGDVKEPLRERVL
GRVTAEDVIKPGTADILVPRNTLLHEKTCDLLEENSVDSVKVRSVVSCETDFGVCANCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGTLKL
SNVKFVMNATGKLVITSRNTELKLIDEFGRTKERYKVPYGSVMGKGDGAEVNGGETVANW
DPHTMPVITEVSGFIRFADMVDGQTITRQTDELTGLSSLVVLDSAERTGSGKDLRPALKI
VDAKGDDVLIPGTDMPAQYFLPGKAIVQLEDGIQIGAGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GEIVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIVSAGSTEFLEGEQAEVSRVKIANRQLAAAGKIEATFSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRKAQGEVPV
VPQVSAEEATANLAELLNAGNLGGNDE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattgaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aagattgctctggcatcgccagatatgatccgttcgtggtcgttcggtgaagttaagaag
ccggaaaccattaactaccgtacgttcaaacctgaacgtgacggccttttctgcgcccgt
atctttgggccggtaaaagactatgagtgcctgtgcggtaagtacaagcgcttaaaacac
cgcggcgtgatctgtgagaagtgcggcgttgaagtgacccagaccaaagtgcgccgtgag
cgcatgggccacatcgagctggcttcaccgactgcgcacatctggttcctgaaatcgctg
ccttcgcgcatcggtttgctgctggatatgccgctgcgtgacatcgaacgtgtactgtac
ttcgaatcctatgtggttgttgaaggcggtatgaccaacctcgagcgtcgtcagatcctg
actgaagagcagtatctggacgcgctggaagagttcggtgacgaattcgacgccaagatg
ggtgcggaagccattcaggccctgttgaaaaacatggatctggaagcggaatgcgagcag
ctgcgtgaagagctgaacgaaaccaactccgaaaccaagcgtaagaagctgaccaagcgt
atcaagctgctggaagcgttcgtgcagtctggcaacaagccagagtggatgatcctgacc
gtgctgccggtactgccgccggatctgcgtcctctggttccgctggatggtggtcgtttc
gcgacttcagatctgaacgatctgtaccgccgcgttatcaaccgtaacaaccgtctgaaa
cgcctgctggatctggccgcgcctgacatcatcgtgcgcaacgaaaagcgtatgctgcaa
gaagcggtagatgccctgctggataacggccgtcgcggtcgtgcgatcaccggttccaac
aaacgtcctctgaaatctttggccgacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgttgggtaaacgtgttgactactccggtcgttctgtaatcaccgtaggtccatac
ctgcgtctgcatcagtgcggtctgcctaagaaaatggcgctggagctgttcaaaccgttc
atctacggcaagctggaactgcgtggcctggccacgaccatcaaagctgccaagaaaatg
gttgagcgcgaagaagctgtcgtttgggacatcctggacgaagttatccgcgaacacccg
gtactgctgaaccgtgcaccaactctgcaccgtttgggtatccaggcgtttgaaccggtt
ctgatcgaaggcaaggcaatccagctgcacccgctggtttgtgcggcatacaacgccgac
ttcgatggtgaccaaatggctgtacacgtaccgctgacactggaagcccagttggaagcg
cgtgcgttgatgatgtctaccaacaacatcctgtcacctgcgaacggcgagccaatcatc
gttccttctcaggacgttgtactgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgagcggcccgaaagaagcggaacgtatttaccgcgccggt
ctggcctctctgcatgcgcgtgtcaaagtgcgtatcactgaagagatcaaaaacaccgaa
ggtgagtctgtacatcagacttcgatcatcgacactaccgttggtcgcgccatcctgtgg
atgatcgtgccaaaaggtctgccgtacgcgatcgttaaccagcctttgggcaagaaagcg
atctccaagatgctgaacacttgttaccgcatcctgggcctgaagccgaccgttatcttt
gctgaccagatcatgtataccggttttgcctatgcagcccgttcaggcgcttcagtaggt
atcgatgacatggttatcccggccaagaaagcggagatcatcgaagaagcggaaaccgaa
gttgccgagatccaggagcagttccagtctggtctggtcaccgccggtgaacgttacaac
aaagtgatcgatatctgggctgcggcaaacgaacgtgttgctaaagcgatgatggaaaac
ctgtcggttgaagacgtggttaaccgtgacggcgttgtggaacagcaagtttccttcaac
agcatctttatgatggccgactccggtgcgcgtggttccgccgctcagattcgtcagttg
gccggtatgcgtggtctgatggcgaagccggacggttccatcatcgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctctactcacggtgctcgt
aaaggtttggcggataccgcactgaaaacggctaactccggttatctgacccgtcgtctg
gttgacgtggcgcaggatctggtggttaccgaagacgactgtggtactcacaacggcatc
acgatgactccggttatcgaaggtggcgacgttaaagagccactgcgtgaacgcgttctg
ggtcgtgtaactgcagaagatgtcatcaagccgggtacggcggacattctggttccacgc
aacacgctgttgcatgagaagacctgtgacctgttggaagagaactctgtcgacagcgtt
aaagtccgttccgtagttagctgtgaaaccgactttggtgtgtgtgcaaactgctatggt
cgcgacctggcacgtggtcacatcatcaacaaaggcgaagctatcggcgttatcgcggca
cagtcaatcggtgagccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggctgctgaatccagcatccaggtgaaaaacaagggtactctgaagctg
agcaatgtgaagttcgttatgaacgccacaggcaagctggtgattacctctcgtaacacc
gaactgaagttgatcgacgaattcggccgtaccaaagaacgctataaagtgccttacggt
tctgtcatgggcaaaggtgacggtgcagaagttaacggcggcgagaccgttgctaactgg
gatccgcacaccatgccagttatcaccgaagtgagtggtttcatccgcttcgctgatatg
gttgacggccagaccattactcgccagaccgacgaactgactggtttgtcttctctggta
gttctggacagcgcagagcgtaccggtagcggtaaagacctgcgtccggcactgaaaatc
gttgatgccaaaggcgacgacgtattgatcccaggtactgatatgcctgctcaatacttc
ctgccaggtaaagcgattgtgcagttggaagacggcattcagatcggtgcgggtgatacc
ctggcgcgtattcctcaggaatccggcggtaccaaggatattaccggtggtctgccacgc
gttgcggatctgttcgaagctcgtcgtccgaaagagccggcaatcctggctgaaatcagc
gggattatctcgttcggtaaagagaccaaaggcaaacgtcgcctggtaatctctccgctg
gacggcagcgacgcatacgaagagatgattccaaaatggcgtcagctcaacgtgtttgaa
ggcgaaattgtggagcgtggcgacgttgtttctgacggcccagagtctccgcacgacatt
ctgcgtctgcgtggtgtgcatgcggttacccgctacatcaccaacgaagtgcaggaagtt
taccgtctgcaaggcgttaagattaacgataaacacatcgaagttatcgttcgtcagatg
ttgcgtaaaggcaccatcgttagtgctggtagcaccgagttcctggaaggcgagcaggct
gaagtgtctcgcgttaagattgccaaccgtcaacttgctgctgcaggcaaaatcgaggca
accttctcacgcgatctgctgggtatcaccaaggcttccttggcgaccgagtccttcatc
tccgcagcatcgttccaggaaacgacgcgcgttctgaccgaagcggctgttgccggtaag
cgtgatgaactgcgcggcctgaaagagaacgtcatcgtgggccgtctgatcccagccggt
accggttacgcttatcaccaggatcgtatgcgccgtaaagcacagggtgaagtgccggtt
gttccgcaggtaagcgcggaagaagcgacagctaacctggctgaattgctgaacgcaggt
aacctgggcggtaacgacgagtaa
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integrated database retrieval system
