Serratia plymuthica AS9: SerAS9_2634
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Entry
SerAS9_2634 CDS
T01503
Name
(GenBank) Exoribonuclease 2
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
srr
Serratia plymuthica AS9
Brite
KEGG Orthology (KO) [BR:
srr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
srr03016
]
SerAS9_2634
Enzymes [BR:
srr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SerAS9_2634
Transfer RNA biogenesis [BR:
srr03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SerAS9_2634
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
PilZ
Motif
Other DBs
NCBI-ProteinID:
AEF45756
LinkDB
All DBs
Position
2836023..2837957
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRVEGVVKGTEKGFGFLEVDGQKSYFIPPPYMKKVMHGDRV
IATLHTEKEREIAEPETLVEPFLSRFVGRVQKRDDRLSIVPDHPLLKDAIQCRPVRELTH
NFQAGDWAVAEMRRHPLKGDRGFNADLTHFITDGEDHLAPWWVTLARHNLEKEAPEMVAI
SEPDAALPREDLTALNFVTIDSASTEDMDDALFVQDNDDGSLQLTIAIADPTAYVEQGSP
LDDIARKRAFTNYLPGFNIPMLPRDLSDNLCSLRPNERRPVLACRVTIGADGALADDIRF
FAAEIESKAKLVYDEVSDWLEGIAGWQPPSNEIAQQITLLKRVCDARNAWRHQHALVFKD
RPDYRFVLGEKGEVLDIITEQRRTANRIVEECMIASNVCAAIVLRDRLGFGIYNVHTGFD
PALVEQAVTVLQANGVEADAEKLLTLDGFCELRRHLDSQPTQFLDSRIRRSQTYAEISTT
PGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAIIAVQPAEKPQDDVTVQLAERRRLNRM
AERDVGDWLYARYLKDKAGTDERFNAEIIDVTRGGLRVRLLDNGAVAFIPAPFIHSVRDE
MVCSQDTGTVQVKGEVVYRQSDTLQVNIAEVRMETRSVIARPAA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataacccgctgctggcgcagcttaaacagcaacttcactctcagaccccg
cgcgttgaaggcgtagtaaaaggaactgagaaaggctttggctttcttgaggtcgacggt
caaaagagctatttcatcccaccgccgtacatgaagaaagtcatgcatggggatcgcgtg
atcgccaccctgcacaccgagaaagaacgcgaaatcgccgagccggaaaccctggtcgag
ccattcctgtcgcgctttgtcggccgcgtgcagaagcgtgatgaccgcctgtccatcgtg
cccgaccatccgttgctgaaagacgcgattcagtgccgcccggtgcgtgaactgacccac
aacttccaggccggtgactgggcggtagcggaaatgcgccgccacccgttgaaaggcgat
cgcggcttcaacgccgatctgacccacttcatcaccgacggcgaagatcatctggctcct
tggtgggtcacgctggctcgccataatctggaaaaagaagcaccggagatggtggccatc
agcgaaccggacgccgcgctgccgcgtgaagatctgaccgcgctgaattttgtcaccatt
gacagcgccagcaccgaggatatggacgatgcgttgttcgttcaggacaacgacgacggc
tcactgcaactgactatcgccattgccgatcctaccgcttacgtagaacaaggcagcccg
ttggatgatatcgcccgcaagcgcgccttcactaactacctgccgggcttcaacattccg
atgttgccgcgcgatctgtctgataacctgtgctcgctgcgcccgaacgaacgccgtccg
gtactggcttgccgcgtcaccatcggtgccgatggcgcgttggctgacgacattcgtttc
ttcgccgccgagatcgagtcaaaagccaaactggtttatgacgaagtgtccgactggctg
gaaggcattgccggctggcagccgccaagcaacgagattgcacagcaaatcaccctgttg
aaacgcgtctgtgatgctcgtaacgcctggcgccaccagcatgctctggtgttcaaggac
cgccctgattaccgctttgttctgggcgaaaaaggcgaagtgctggacatcatcaccgaa
caacgccgcactgccaaccgtatcgttgaagagtgcatgattgcctccaacgtgtgcgcc
gccatcgtactgcgcgatcgcctgggcttcggaatttacaacgtgcataccggtttcgat
ccggcgctggttgaacaggcggttaccgtgctgcaagccaacggtgtggaggccgatgcc
gagaaactgctgacgctggacgggttctgcgaactgcgccgtcatctggactcgcaacct
acccagttcctcgacagccgtatccgccgttcccagacctatgccgagatcagtaccacg
ccaggcccgcatttcggcctggggctggaagcctacgccacctggacctcaccgatccgt
aaatacggcgatatggtcaaccaccgtctgctgaaagccatcatcgccgtacagcctgcc
gaaaaaccgcaggacgacgtgacggtccaattggcggaacgccgtcgtcttaaccgcatg
gcggagcgtgacgtcggtgactggctgtatgcacgctacctgaaagacaaagccggcacc
gatgagcgcttcaatgcggaaatcatcgacgtgacccgcggcggcctgcgcgtacgcctg
ctggacaatggtgctgtcgcctttatccccgcgccgtttattcactcggtgcgtgatgaa
atggtctgcagccaggatactggcacggtgcaagtgaaaggcgaagtcgtctatcgccag
agcgatactctgcaggtcaatatcgccgaagtgcgtatggaaacccgcagcgtgatcgcc
cgaccggcggcataa
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