Serratia plymuthica AS9: SerAS9_2851
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Entry
SerAS9_2851 CDS
T01503
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
srr
Serratia plymuthica AS9
Brite
KEGG Orthology (KO) [BR:
srr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
srr03016
]
SerAS9_2851
Enzymes [BR:
srr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
SerAS9_2851
Transfer RNA biogenesis [BR:
srr03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SerAS9_2851
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
AEF45970
LinkDB
All DBs
Position
complement(3036638..3037810)
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AA seq
390 aa
AA seq
DB search
MPALLCLNHESDQENDVLNYQLITTDAGLQQVCEQARNHAQIALDTEFVRTRTYYPQLGL
IQLYDGEQLSLIDPLPIKQWQPFIDLLSDTQIVKFLHAGSEDLEVFLNAFKTLPTPMVDT
QILAAFTGRPLSCGFATLVKEYMQVDLDKSESRTDWLARPLTEKQCVYAAADVFYLLPMA
KQLVQETEDAGWTAAAANECLLLCQRRSESLAPELAYREITNAWQLRPRQLGCLQKLAEW
RLRQARERDLAVNFVVREENLWQVARYMPTSLGELDSLGLSGPEIRYHGKTLLALVAEAS
ELDEAALPEPLSNLIDQPGYKKVFKDIKAAIVIVSEQSGLSSELLASRRQINQLLNWHWK
LKSGDSLPELVSGWRGDLLATPLQDILKNY
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgccggcgttgttgtgtttgaatcatgaaagcgaccaagagaatgacgttttgaactat
cagttgatcactaccgatgccggattgcagcaggtctgcgagcaggcaagaaaccatgcc
cagattgcgttggacaccgaatttgtcagaacgcgcacctactatccgcagttaggcctg
attcagttatacgacggtgaacaactctccctgatcgatcccttgccgatcaagcaatgg
cagccgtttatcgatctgctgagcgatacccagattgtgaaatttctgcacgccggcagt
gaagaccttgaggtgttcctgaatgcgttcaaaacgctgccgaccccgatggtcgatact
cagatcctggcagcctttactgggcgaccgctgtcttgtggttttgcgaccttggtgaag
gagtatatgcaggtagatctggataaaagtgaatcccgcacagattggctggcgcgtccg
ctgacggaaaaacagtgcgtatacgccgcagccgacgtgttctacctgctgccgatggcc
aaacaactggtgcaggaaaccgaagacgccggttggactgctgccgccgccaatgagtgc
ctgttgctctgtcagcgccgcagcgagtcgctggcgccggagttggcctaccgtgaaatc
accaacgcctggcagctgcgcccgcgccaactgggttgtttgcagaaactggcggaatgg
cgactgcgtcaggcgcgtgagcgtgatttggcggtgaactttgtggtacgcgaggaaaac
ctgtggcaggtagcgcgctatatgccaacttcgctgggagaattggattcgctcggcctg
agcggcccggaaattcgttatcacggtaagacgttgctggcgttggtggccgaggccagc
gagctggatgaagctgcactgcccgagccgttgtccaacctgatcgaccagccgggttat
aagaaagtgttcaaggatatcaaagcggcgatcgttattgtcagtgaacaaagcgggtta
agcagtgaattgctggcatcgcgtcggcagattaaccaactgctgaattggcattggaaa
ttgaaaagcggtgacagcctgccggaattagtcagcggttggcgcggtgacttattagcg
acgccacttcaggacattctgaaaaattattaa
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