Serratia plymuthica AS9: SerAS9_3352
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Entry
SerAS9_3352 CDS
T01503
Name
(GenBank) Exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
srr
Serratia plymuthica AS9
Pathway
srr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
srr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
SerAS9_3352
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srr03400
]
SerAS9_3352
Enzymes [BR:
srr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
SerAS9_3352
DNA repair and recombination proteins [BR:
srr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
SerAS9_3352
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SerAS9_3352
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SerAS9_3352
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
AEF46462
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All DBs
Position
3572209..3573636
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AA seq
475 aa
AA seq
DB search
MSSKAPATFYIHDYETFGKSPSMDRPAQFAGVRTDMDFNIIEEPLVIYCKPADDYLPDPE
AVMITGITPQLALAKGVNEADFAREIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRSFYD
PYAYSWQNGNSRWDLLDVMRACYALRPEGIVWPENEDGFPSFRLEHLTRANGVEHEHAHD
AMSDVYATIAMAKLVKQAQPRLFDFLLQHRNKHKLNALIDIAEMTPLVHVSGMFGAARGN
TSWVSPLAWHPDNKNAVIMCDLAGDMTPLLTLSADELRERLYTRREDLAADQSPVPIKLV
HINKCPVLAPAKTLLPENAERLGIDRQACLQNLQLLRQNPQVREKVVALFADAEPFKAVD
DVDARLYDGFFSDADKAAMRIIQQTKPQNLPALDLTFSDGRMKELLFRFRARNYPNTLDD
AEQRRWLQHRQEALSAERVQSYVLQLESLYNLHEGDKEKTALLKALFEYGKELVG
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
ttgagcagtaaggcaccggccacattctacatccacgattacgagaccttcggcaaaagc
ccatcgatggaccgcccggcgcagtttgccggcgtgcgtaccgatatggatttcaatatc
atcgaagaacctctggtcatttactgcaaaccggccgacgattacctacccgatcctgaa
gcggtgatgatcaccggtatcacgccgcaactggcgctggccaaaggcgttaacgaagcc
gactttgcgcgcgaaatccatcaggcgttcagcgtgccgggcacctgtattctgggttac
aacaatatccgcttcgatgacgaagtcagccgtaatattttctatcgcagcttctatgat
ccctacgcctacagttggcaaaacggcaactcccgctgggatttgcttgacgtgatgcgt
gcctgctatgcgctgcggccggagggcatcgtttggccggagaacgaagatgggttcccc
agtttccgcctggaacatctgactcgcgccaacggcgtcgagcacgagcatgcccatgac
gccatgtcggacgtttacgccaccatcgccatggccaagctcgtgaagcaggcgcaaccg
cggctgtttgattttctgctgcaacaccgcaacaaacacaagctgaacgccttgatcgat
atcgcggaaatgacgccgctggtgcacgtttccgggatgttcggcgcagcgcgcggcaac
accagttgggtatcgccgctggcctggcacccggacaacaagaatgcggtgatcatgtgc
gatttggccggcgatatgaccccgctgctgaccttgagcgccgacgaactgcgtgaacgc
ttgtatacccgccgtgaggatctggcggccgaccaatccccggtgccgatcaagctggta
catatcaataaatgcccggtgctggcacctgccaagacgctgctgccggaaaacgccgag
cgattgggtatcgaccgccaggcctgcctgcagaatttgcaattgctgcgccagaatccg
caagtccgcgagaaggtggtggcgctgttcgccgatgccgagccttttaaagccgtcgac
gatgtggacgccaggctgtacgacggtttcttcagcgatgccgacaaggcggcgatgagg
atcatccagcaaaccaagccgcagaatctgccggccctggatctgaccttcagcgatgga
cgcatgaaagagctgctgttccgcttccgcgcccgcaactacccgaatacgctggatgac
gccgagcagcgccgctggttgcagcaccgtcaggaggccctgagcgccgaacgggtgcag
agctacgtgctgcagctggaatcactgtataacctgcacgaaggcgataaagaaaagact
gcgctgctgaaagcgctgtttgaatacggcaaagagttggtgggctaa
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