Serratia plymuthica AS9: SerAS9_3753
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Entry
SerAS9_3753 CDS
T01503
Name
(GenBank) DNA repair protein and transcriptional regulator, AraC family
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
srr
Serratia plymuthica AS9
Pathway
srr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
srr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SerAS9_3753
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
srr03000
]
SerAS9_3753
03400 DNA repair and recombination proteins [BR:
srr03400
]
SerAS9_3753
Enzymes [BR:
srr01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
SerAS9_3753
Transcription factors [BR:
srr03000
]
Prokaryotic type
Helix-turn-helix
AraC family
SerAS9_3753
DNA repair and recombination proteins [BR:
srr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SerAS9_3753
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
HTH_23
HTH_3
Motif
Other DBs
NCBI-ProteinID:
AEF46857
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All DBs
Position
complement(4009215..4010711)
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AA seq
498 aa
AA seq
DB search
MNKKLTPSVAMKNQQQALYDALSARDRKFDGRFFVGVSSTGIYCRPVCSARTPKIENCTF
YPSAAAAELAGFRPCLKCRPELAPGLALIDLGNRYAQVAVQLIEQGYLSEHSCEQLAARL
GISDRHLRRIFADQFGASPIDYAQSHRLLQAKRLLADTDLPLSEVAFAAGFGSLRRFNEL
FKARYRLIPSALRSNGSRNERTVASGLVFHLAYRPPYDWPRMLGFLQTRAVSGVEKVQDQ
QYLRSIAVTLGGVEYRGWVSVLPEEAHNRVRVEVAPSLSRVTTEVLRRIRQLFDLDAAPD
LIANALGTLAADAPGLRLPGCVNSFEQATRAVLGQLVSVKMAATFAGRMAERWGTALEQP
YDGITHVFPSAERVAQLQPEDLRPLGVQLKRAAALIALAQAVTEGRLQLDNVLDIEQGIK
ALTALSGIGNWTASYIAMRAWSWPDVFLTGDYLIKQRFPGMTPRQIERYAERWRPWRSYA
TLHLWHNDAWAPLTDTAG
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaaaaactgaccccgagcgttgccatgaaaaaccagcaacaggccctgtatgac
gcactgagtgcgcgcgatcgaaaatttgacggccgcttttttgtcggcgtgtcgtcgacc
ggcatctattgccgcccggtgtgcagcgcccgcacgccgaaaatcgaaaactgcactttt
tatcccagtgcggcggcggcggaactggcagggtttcgcccctgtctgaagtgtcggccg
gagctggcgccgggattggcgctgatcgatcttggcaaccgctatgcgcaggtggcggtg
caactgattgagcagggctatttgtccgaacacagctgcgagcaactggcggcgcggctt
gggatttccgatcgccacctgcggcgcatctttgccgatcagtttggtgcctcgccgatt
gattacgcccagtcacataggctgttgcaggccaagcggttgctggcggataccgacttg
ccgttgagcgaggtggcgtttgccgccggtttcggcagcctgcggcggtttaatgaattg
ttcaaggcgcgctaccggctgatcccctccgcgctgcgcagcaacggtagccgcaatgag
cgtaccgtcgccagtgggttggtgtttcatctggcttatcgcccgccgtatgactggccg
cgcatgctgggctttttacagacgcgcgcggtaagtggcgtggaaaaagtgcaggatcaa
cagtatttgcggtcgatcgccgtcactctgggcggggtggagtaccgtggttgggtcagc
gtgctgccggaagaggcgcataaccgggtgcgggtagaagttgcgccttcgctgagccgg
gtgaccaccgaggtgctgcggcgtatccgccagctattcgatttggacgctgccccggac
cttatcgccaatgcgttagggacattagccgccgatgcgccgggcttgcggctgcccggc
tgcgttaacagcttcgagcaggcgacccgcgcggtgctggggcaactggtcagcgtgaag
atggcggccacctttgccgggcggatggccgaacgttggggcaccgcattggaacagcct
tacgacggcattacccatgtgtttcccagtgctgaacgggtggctcaattgcagcccgaa
gatttgcgcccgctgggggtacagctcaaacgcgcggcggcgctgatcgcccttgcgcag
gcggtcaccgaagggcggttgcagttagataacgtgctggatatagagcaggggattaag
gcactgaccgcgctgtcgggtatcggcaactggacggcgagctacatcgccatgcgtgcc
tggtcatggccggatgtatttttaacgggggattatctgatcaaacagcgtttccccggc
atgacaccgcgccagattgagcgctatgccgaacgctggcggccgtggcgttcctacgcc
acgctgcatttgtggcataacgacgcctgggcgccgttaacggataccgccgggtaa
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