Serratia plymuthica AS9: SerAS9_4002
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Entry
SerAS9_4002 CDS
T01503
Name
(GenBank) exodeoxyribonuclease V, alpha subunit
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
srr
Serratia plymuthica AS9
Pathway
srr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
srr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
SerAS9_4002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srr03400
]
SerAS9_4002
Enzymes [BR:
srr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
SerAS9_4002
DNA repair and recombination proteins [BR:
srr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SerAS9_4002
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
UvrD_C_2
Viral_helicase1
Helicase_RecD
AAA_11
AAA_22
SH3_13
UvrD-helicase
SLFN-g3_helicase
PhoH
nSTAND3
AAA_16
CbiA
UvrD_C
AAA_28
T2SSE
SRP54
TrwB_AAD_bind
MukB
ATPase
AAA
Flavi_DEAD
NTPase_1
NPHP3_N
AAA_24
Motif
Other DBs
NCBI-ProteinID:
AEF47102
LinkDB
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Position
complement(4275214..4277064)
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AA seq
616 aa
AA seq
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MIALLEQAQALGVLRPLDLQFARIVAGEEEPDILLAAACLSAEAGAGHVCLMLEQLLPEN
LFEGRQPELAQAVWLAAGQPDLARWQQRLMASAAVGDGSSAMPMVLQQQRLYLQRMWQNE
GEVAEFISSDSIHQAVDEPELHAILDRLFGEATNEPDWQKIAAAVAATRRIAVISGGPGT
GKTTTVAKLLAALVQLADGRRLRIQLAAPTGKAAARLTESLGSAGRQLALTPEQRALFPT
DASTLHRLLGAQPNSQRMRYHRGNPLHLDVLVVDEASMVDLPMMARLIAALPTQARVIFL
GDRDQLASVEAGAVLGDICRFAEQGYSAARAEQLTRLTGCLLQGQSAQAEAAVRDSLCLL
RKSYRFDADSGIGQLAFAVNAGDGKRAAWALSGSFSDVAGYPLAETEDYQALLNACVAGY
GDYLQRVAARADAGEVLAEFGRFQVLCALREGPFGIAGLNERIEAGLQRAGLIQRTPGAL
GRWYPGRPVMIGRNDSALGLFNGDIGIALRDESGELRVHFQLPDGNIKSVQPSRLPAHET
AYAMTVHKSQGSEFDHTVLVLPNHFLPVLTRELVYTAITRARSQLSLYATETVLMRAIRT
PTQRRSGLAERLQITP
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgatcgcgctactggaacaggcacaggcacttggcgtgctgcgcccgttggacctgcag
tttgcccgtatagtggccggtgaggaagagcctgacattctgctggctgccgcctgcctc
agtgcggaggcaggcgccggtcatgtttgcctgatgctggaacagttactgccggaaaat
ctgtttgaagggcgtcagccggaactggcgcaagccgtgtggctggcggccgggcaaccg
gatcttgcccgctggcagcagcgcctgatggccagtgcggcggtgggtgacggcagcagt
gccatgccgatggtgttgcaacagcagcgtttgtacctgcagcgcatgtggcagaacgaa
ggcgaggtggcggagtttatcagcagcgacagtatccatcaggcggttgatgaacccgaa
ctgcatgccatcctcgatcggctgttcggcgaggcgacgaatgagccggactggcagaaa
attgctgccgcagtggccgcgacgcggcgtattgctgtgatttcaggtgggccgggcacc
ggcaaaaccaccaccgtcgccaaattgctggcggcgctggtacagcttgccgatggcagg
cgcttgcgtattcaactggcggcacccaccggcaaggcggcggcgcgtctgaccgaatcg
ctcggcagcgccggcaggcagttggcgttaaccccggagcaacgcgcgctgttccccacc
gatgcgtcgacgctgcaccgcctgttaggcgctcagcccaatagccagcgcatgcgttat
caccgtggcaacccgctgcatctggatgtgctggtggtggacgaggcttcaatggtcgat
ctgccgatgatggcgcgtctgattgccgcattgcccactcaggcgcgggtgattttcctt
ggcgacagggatcaactggcgtcggtagaggccggtgctgtactgggggatatctgccgt
tttgccgagcagggatacagtgctgctcgtgcggaacaactcacccggctgacaggctgc
ctgttgcaggggcaaagtgcgcaggcggaagcggcggtgcgagacagcctgtgcctgctg
cgcaaaagctatcgttttgatgccgattcgggcattggtcaattggcttttgcggtgaat
gccggtgacggtaagcgtgcggcttgggcactcagcggcagtttcagtgacgttgcgggt
tacccattggcagaaacggaggactatcaggccctgctgaacgcctgtgtagcaggctac
ggtgattatttgcagcgggtcgctgccagggcggatgcgggagaggtgctggcggagttt
ggccgtttccaggtgctgtgcgcgctgcgcgaagggccattcggtatcgccgggctgaac
gagcgtatcgaggcgggattgcaacgggccgggctgatccagcgtacgccaggggccttg
gggcgttggtatcccggtcgtccggtgatgattggccgcaacgacagtgcgttggggctg
tttaacggcgatatcggtatcgctctgcgtgatgagagcggcgagctgcgcgtgcacttc
caactgccggacggcaacatcaagtcggtgcaaccgagccgtttaccggcgcatgaaacc
gcctatgcaatgacggtgcacaagtctcagggatcggagtttgatcatacggtgctggtg
ttgcccaatcacttcttgccggtactgacccgcgaactggtgtataccgccatcacccgc
gcgcgtagccagctttcgctgtatgccaccgagaccgtgctgatgcgggcgatccgcacg
ccaacccaacgccgcagcgggttggcggagcgcttgcagataacgccataa
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