Serratia plymuthica AS9: SerAS9_4005
Help
Entry
SerAS9_4005 CDS
T01503
Name
(GenBank) exodeoxyribonuclease V, gamma subunit
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
srr
Serratia plymuthica AS9
Pathway
srr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
srr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
SerAS9_4005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srr03400
]
SerAS9_4005
Enzymes [BR:
srr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
SerAS9_4005
DNA repair and recombination proteins [BR:
srr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SerAS9_4005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Rv2632c-like
Motif
Other DBs
NCBI-ProteinID:
AEF47105
LinkDB
All DBs
Position
complement(4283704..4287075)
Genome browser
AA seq
1123 aa
AA seq
DB search
MFRVYHSNQLDLLKTLTSTLIAREPLADPFQQEVVLVQSPGMAQWLQMQLAEQFGIAANI
AFPLPATFIWDMFTRVLPGIPKESAFSKDAMTWKLMWLLPDLLTRPEFAPLQHYLTDDGD
KRKIHQLAGRVADLFDQYLVYRPQWLESWQNGESIDGLAEAQQWQAPLWARLVEYTHELG
QQEWHRANLYRRFISVLEKAERCPEGLPPRVFICGISALPPVYLEALQALGRHIDIHLMF
TNPCRYYWGDIQSQSFLAKLQSRKRRHYQDKTEYALFRDPDNAAALFNAEGEQDLPNPLL
ASWGKLGRDHHFLLSQIESAQEIFAFVDIPADNLLHAIQHDMLELKNSAVIGTTLETLES
SATKRRLDPEDRSISLHACHSPQREVEVLHDQLLTMLAADPALTPRDIIVMVADIDSYTP
YIQAVFGNASPERYLPFAISDRKASQAHPALQAFISLLDLPQSRFTSEQVLALLEVPALA
ARFSIQEEGLRLLRHWVGESGVRWGLDDDNVRELDLPATGQHTWQFGITRMLLGYAMDSN
AGDWQGVLPYDESSGLVAELAGQLAELLASLSRWRQRLTEARALPEWLPLCRQLLDTFFE
PDGETEAALALIEQQWSKVFEHGLAARYPDEVPLTILRDELAARLDQERISQRFLAGQIN
FCTLMPMRSIPFKVVCLLGMNDGVYPRTLPPLGFDLMAQQVKRGDRSRRDDDRYLFLEAI
LSAQQRLYISFIGRSIQDNSLRYPSVLVTELLEYLEQSYCLPGDEALDADASAQKVGKHL
LSWHARMPFAAENFLPGAEAQSYAAEWLPAADKRGAAHPPFNQPLLPDEQTQISLDDLLR
FYRHPIRAFFQLRLGVSFILEETELPDEEPFILDNLSRYQFNSQLLNTLIDGEDPARLFQ
RVRAAGGLPFGPFGEIYWQKQQEEMSELAEQVRAERSEGHSLELDIDIAGVHISGWLHQV
QEDGLLRWRPATLSAVDGILLWLEHLAYCCAGGTGESRIYGRKGAAWRFAALTAEDAREQ
LAELVEGYQRGLCQPLLLLNKSGWAWLSQCYQPETQSIDWDEEVQIKARAKLLQTWQGDQ
RIPGEGEDAYVQRVFRQLDNACLEQILAETERYLLPVAKHNLG
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgtttagggtttatcattccaatcagttggatttgctgaaaacgctgaccagcacgttg
atagccagagagccattggccgatccttttcagcaggaagtggtgctggtgcaaagcccc
ggtatggcgcagtggttgcagatgcagctcgcggaacagtttggcattgccgccaatatc
gccttcccactgcccgcaaccttcatctgggacatgttcacccgggttttgcccggcatc
ccgaaagagagcgccttcagtaaagacgccatgacctggaaactgatgtggctcctgccg
gatcttctcacgcggccggaatttgccccgctgcaacattacctcaccgacgacggcgac
aagcgtaaaattcatcagcttgccggtcgggtggcagacctgtttgaccaatatctggta
tatcgcccgcaatggctggaaagttggcaaaacggcgaaagcattgatgggctggcggag
gcccagcaatggcaggcaccgctgtgggcgcggctggtcgaatatacccatgagctgggg
caacaggaatggcatcgtgcaaacctgtatcgtcgctttatcagcgtgctggaaaaggcg
gaacgctgcccggaagggttaccgccgcgggtgtttatctgcggtatctcggcgctgccg
ccggtgtatctggaggccttgcaggcgctgggtcgccatattgatattcacctgatgttc
accaatccgtgccgctactattggggggatattcagagccaatcattcctggcgaaattg
cagagccgcaagcggcgccattatcaggataaaacggaatatgcgttattcagagatccc
gataacgccgccgcgctgtttaatgcggaaggcgagcaagacctgcccaatccgctgttg
gcctcatggggcaagttggggcgtgaccaccactttttgctctcgcagatagaatccgcg
caggagatttttgcgtttgtagatatccctgcggataacttattgcacgccattcagcac
gatatgctggagttgaaaaatagcgccgtcatcggcaccacgctggaaacgctggagagc
agcgcgaccaaacgccggctcgatcccgaggatcgttctatcagcctgcacgcttgccac
agcccgcagcgtgaggtggaggttttacacgaccagctgttgaccatgctggcggcagat
cctgcgctgacgccgcgcgatatcatcgtgatggtggcagatatcgacagctacacgcct
tatattcaggcggtgttcggcaacgcttccccggaacgctatctgccgtttgcgatttct
gaccgcaaggcgagtcaggcgcacccggcgctgcaggcgtttatctcgctgctggatctg
ccgcagagccgttttacttctgaacaggtgttggcgctgctggaagtgccggcgctggcg
gcgcgtttctcgatccaggaggaagggttgcgcctgttacgccactgggttggggagtcc
ggcgtccgctgggggctggatgacgacaacgtacgtgaactggatctgccggccaccggc
cagcatacctggcagttcggcattacccgaatgctgttgggctacgccatggacagcaat
gccggcgattggcagggcgtgttgccttatgacgaatcgagcgggctggtcgcggagctg
gccgggcagttggccgaactgttggcctccctcagccgctggcggcaacgattgaccgag
gcgcgcgctctgccggagtggctgccgctttgccgccaactgcttgataccttctttgag
ccggacggcgaaaccgaggcggcactggcgctgattgagcaacagtggagcaaagtgttt
gaacacgggctggcggcgcgttaccccgatgaggtgccgttgactattctgcgtgacgaa
ctggctgcgcgtcttgatcaggaacgtatcagtcaacgcttcctcgccgggcaaatcaac
ttctgcacgctgatgccgatgcgttccattccgttcaaagtggtttgcctgctgggcatg
aacgatggggtttatccgcgcactttgccgcctctgggctttgatctgatggcacagcag
gtaaaacgcggcgatcgcagccgccgcgacgacgatcgctatctgttcctggaggcgatt
ctgtcggcacagcagcggctgtatatcagttttattggccgttccattcaggataacagc
ctgcgttacccttcggtgctggtaaccgaactgctggagtatttggagcaaagttattgc
ctgccgggtgatgaggcactggatgccgatgccagcgcacagaaggtcggtaaacacttg
cttagctggcacgcgcgcatgccgttcgccgccgagaattttttgcccggcgcggaagcg
caaagctatgccgccgaatggctgcccgcagctgataaacgcggtgcggcgcatccaccg
tttaaccaaccgctattgcctgatgagcagacccagatctcgctggatgatttgctgcgg
ttctatcgccaccccatccgcgcgttcttccaactgcggctgggggtcagttttatcctt
gaagaaaccgaattgccggatgaagagcccttcatcctggataatctcagccgctatcag
ttcaacagccaattgttgaataccttgattgacggagaggatcccgcccgtttgttccag
cgggtgcgtgccgccggcggcttgccttttggccccttcggcgagatttactggcagaaa
cagcaagaggagatgagcgaactggccgagcaggtgcgcgccgaacgcagcgaagggcac
agtctggagctggatatcgacatcgccggtgtgcatatcagcgggtggttgcatcaggta
caggaggacggtctgctacgctggcgaccggccaccctgtcggcggttgatggaatactg
ttgtggctggaacatctggcgtactgctgcgccggtggcacgggggaaagccgtatttat
ggccgcaaaggcgccgcgtggcgttttgccgcgttaaccgccgaggatgcccgcgagcag
ttggctgagctggtggagggttatcagcgcggtttatgccagccgttgctcttgctcaat
aaaagcggttgggcgtggctgagccagtgctatcaaccggaaactcagagcattgactgg
gatgaagaggtgcaaatcaaggcgcgggccaagttattgcaaacctggcagggcgatcag
cgcattcctggagaaggcgaagacgcctatgttcaacgggtattccgtcagttggacaat
gcctgtttagagcaaattctggccgaaacagaacgttacctgttgccggtggcgaagcat
aatttaggttga
DBGET
integrated database retrieval system
