Serratia plymuthica AS9: SerAS9_4098
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Entry
SerAS9_4098 CDS
T01503
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
srr
Serratia plymuthica AS9
Pathway
srr03410
Base excision repair
srr03430
Mismatch repair
srr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
srr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SerAS9_4098
03430 Mismatch repair
SerAS9_4098
03440 Homologous recombination
SerAS9_4098
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srr03400
]
SerAS9_4098
DNA repair and recombination proteins [BR:
srr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
SerAS9_4098
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
SerAS9_4098
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SerAS9_4098
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
DUF2065
Motif
Other DBs
NCBI-ProteinID:
AEF47197
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Position
complement(4383172..4384905)
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AA seq
577 aa
AA seq
DB search
MSIKTQLRRRAATDDSHLPASLHPLLRRLYALRGVKAEQELERSVKGMLPWQQLDGIDTA
VGILQQALAASRRIMVVGDFDADGATSTALTVLALRSMGGSAVDYLVPNRFEDGYGLSPE
VVEQAAARGAELILTVDNGISSHAGVDVAHAKGMQVLVTDHHLPGETLPAAEAIVNPNLR
GCEFPSKSLAGVGVAFYLMLALRARLRDSGWFEQRALAMPNLAELLDLVALGTVADVVPL
DANNRIMVYQGLNRIRAGKCRPGIRALLEVANRDARQLAANDLGFALGPRLNAAGRLDDM
SIGVALLLSDDIAQARMLANDLDALNLTRREIEQGMQVEALQLCDELERSSTALPYGLAM
YHPEWHQGVVGILASRIKERFHRPVIAFAPAGEGILKGSGRSIAGLHMRDALERLDTLNP
GLMMKFGGHAMAAGLSLEEAKFDEFRQRFGELVGEWLDPAMLEGVIWSDGELAMQELSLE
TAELLREGGPWGQAFPEPTFDGKFRILQQRLVGEKHLKLMVEPLGGGPLLDGIAFNVDTT
LWPDSSVREVELAYKLDVNEFRGNRNVQLLIQHLWPR
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
gtgagcatcaaaacacaactacgccgccgtgcggcgacggacgacagccatctgccagcc
agcctgcacccgctactgcgccgtttatacgcgctgcgcggcgttaaggctgagcaggaa
ctggagcgcagcgtcaaaggcatgctgccctggcagcaattggacggtatcgacaccgcc
gttggcattctgcagcaggcgctggccgcgagtcgccgcatcatggtggtgggggacttc
gacgccgatggcgccaccagtaccgcattgacggtgttggcgttgcgcagcatgggcggc
agtgcggttgactacctggtgccgaaccgcttcgaggacggctacggcctgagcccggaa
gtggtcgagcaggcggcggcgcgcggcgcagagttgatcctgaccgtggataacggcatc
tcttctcacgcgggcgtcgacgtggcgcacgccaagggcatgcaggttctggttaccgac
caccacctgccgggggaaaccttgccggcggcggaggcgatcgtcaacccgaacctgcgc
ggctgtgagttcccctccaaatccttggccggcgtcggtgtggctttctatctgatgctg
gcgttgcgtgcccggctgcgtgacagcggttggtttgaacaacgtgcgttggcgatgccg
aacctggcagagttgttggatctggtcgctctcggcacggttgccgacgtagtgccgctt
gacgccaacaaccgcattatggtgtatcagggcctgaatcgcattcgcgccggcaagtgt
cggccgggcatccgggcgctgctggaagtggccaaccgtgatgcgcgccaactggcggcc
aacgatcttggctttgcgctggggccgcggctcaatgccgccgggcggctggacgacatg
tcgattggcgtggcgctgttgctgagcgatgacattgcgcaggcgcgcatgctggccaac
gatctcgatgcgcttaacctgacacggcgtgagattgagcagggcatgcaggtcgaggcc
ttgcagctgtgcgatgaactggagcgcagcagtaccgccttgccgtatggactggcgatg
tatcatccggaatggcatcagggcgtggtgggtattctggcctcgcgcatcaaagaacgt
ttccaccgcccggtgattgcgtttgcgccggcgggcgagggcattctgaaaggttccggc
cgttcgatagccggcctgcatatgcgcgacgcgctggagcggctggatacgctgaatccg
ggcttgatgatgaagtttggcggccatgcgatggcggccgggttgtcgctggaagaggcc
aaattcgacgagtttcgtcagcgctttggcgaactggtgggggaatggctcgatccggcg
atgctggaaggggtgatttggtctgacggcgaactggcgatgcaggagctttcgctggaa
acggcggagttgttgcgcgagggggggccctgggggcaggcgttcccggaaccgactttc
gacggtaagttccgtatcctgcaacagcggctggtgggtgagaaacacctgaagctgatg
gtggagccgcttggcggcggcccgttgctcgacggcatcgccttcaacgtggacaccacc
ctgtggcccgacagcagcgtgcgtgaagttgagctggcctataagctcgacgtcaatgag
ttccgtggtaaccgcaacgtgcagttattgatccagcacctctggccgcgttga
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