Serratia plymuthica AS9: SerAS9_4472
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Entry
SerAS9_4472 CDS
T01503
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
srr
Serratia plymuthica AS9
Pathway
srr02020
Two-component system
srr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
srr00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
SerAS9_4472
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SerAS9_4472
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
srr03021
]
SerAS9_4472
Transcription machinery [BR:
srr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SerAS9_4472
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
AEF47566
LinkDB
All DBs
Position
4827159..4828592
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AA seq
477 aa
AA seq
DB search
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQEIQLALESNPLLEQTDLHEEIDAKE
STETEGLDTREALEQKDMPEELPLDATWDEIYTAGTPSGTGTDYSDDELPVYQGETTQTL
QDYLMWQVDLTPFSDTDIAIATSIVDAVDDTGYLTVPLEDILESMGDESVTMDEVEAVLK
RVQRFDPVGVAARDLRDCLLIQLSQYAKDTPYLAEARLIISEHLALLANHDFRSLMRTTR
LKEDTLKEAMLLIQSLDPRPGQSINTGESEYVIPDVLVRKVQDSWTVELNADSIPRLKIN
QQYAAMGSSARNDSDGQYIRSNLQEAKWLIKSLESRNDTLLKVTRCIVEQQQAFFEQGAE
FMKPMVLADIAQAVEMHESTISRVTTQKFLHSPRGIFELKYFFSSHVNTDSGGEASSTAI
RALVKKLIAAENPAKPLSDSKLATLLSDQGIIVARRTVAKYRESLSIPPSNQRKQLV
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaaggtttgcaactcaggctcagccaacaactggccatgaccccccagctccag
caggctatccgcctgctgcagttgtccacgcttgagctccagcaggagatacagctggcg
ttagagagcaatcccctgcttgagcagaccgatctgcacgaagaaatcgacgccaaagag
agtaccgagaccgaagggctggatacccgcgaggcgttggaacaaaaggacatgcccgaa
gagctgccgcttgacgccacctgggacgaaatctacaccgcaggtacaccgtccggcacc
ggcaccgattacagcgatgatgagttgccggtctatcagggcgaaaccacccagacgctg
caggattacctgatgtggcaggtggatctcacgccattctccgataccgatatcgccatt
gccacctcgatagtcgacgccgtcgacgacaccggctatctcaccgtaccgctggaagat
attctggagagcatgggtgacgagagtgtgacaatggacgaagtcgaagcggttttgaag
cgcgtgcagcgttttgatccggttggcgtcgccgcgcgcgatctgcgcgactgtctgctg
atccagctttcccaatacgcaaaagatacgccctatctggctgaagcgcgcctgatcatc
agcgaacatctggctctgttggccaatcacgactttcgcagcctgatgcgaacaacccgg
ctaaaagaagatacactgaaagaagcgatgctgctgattcagtctcttgatccgcgcccg
ggccagtcgatcaatactggcgagtcagaatacgtgatcccggacgtgctggtacgcaag
gtacaggacagttggacggtagagctcaacgccgacagcattccgcggctgaagatcaac
cagcagtacgccgccatgggcagcagcgcgcgtaacgacagtgacggccagtatatccgc
agcaatctgcaggaagcgaaatggctgatcaagagcctggaaagccgtaacgacaccttg
ctgaaagtcacgcgctgcatcgtcgagcagcaacaggcgttctttgaacagggtgctgaa
tttatgaagcccatggtgctggcggatatcgctcaggccgtggagatgcatgaatcgaca
atctcacgtgtcaccacgcagaagtttctgcacagtccgcgcggcattttcgagttgaaa
tatttcttctccagccatgtgaataccgacagcggaggcgaagcttcctctacggcgatc
cgggcgttagtgaagaaattgattgcggcggaaaaccccgctaaaccgctcagcgacagc
aagctggccaccctgctctccgatcaggggatcatcgtggcgcggcgtaccgtcgccaag
taccgagagtctttgtccatcccgccgtccaaccagcgtaaacagttggtttga
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