Serratia plymuthica AS9: SerAS9_4516
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Entry
SerAS9_4516 CDS
T01503
Name
(GenBank) diguanylate cyclase/phosphodiesterase
KO
K18765
RNase E specificity factor CsrD
Organism
srr
Serratia plymuthica AS9
Brite
KEGG Orthology (KO) [BR:
srr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srr03019
]
SerAS9_4516
Messenger RNA biogenesis [BR:
srr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SerAS9_4516
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAPES4
Hrs_helical
RH1
Motif
Other DBs
NCBI-ProteinID:
AEF47610
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All DBs
Position
complement(4878864..4880795)
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AA seq
643 aa
AA seq
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MRFTTKLSALITLLVALAMFLMLMGCSYSFFYVTQDRLERRFDSLVTSLDQSMLHGSPDE
QQQWLPLVMRPLGIVAVSVDSGRTNLFTYKLPALKLPWDLLNGCRQVSRPLLQHPGSSLH
ITYIDPFVSDVRSLQSTGAVTLSIVAMVVILLFSLRWLREQAEGEDRLERRARRILNGER
ENVMQGDVREWPANVSGALDRLLADLAEAREARSRVDTLIRAFAAQDAKTGLNNRLFFDN
QLATQLEEEGSHGIVMMVRLPDFDTLRETHGNSAVQELMYSLVNLLSTFVMRYPAALLAR
YFHSDFTVLLPHRTLKEADGIAAQLVNAIDALPSTALIDRETFLHIGIVAYRSGQTPEQV
IDYAEQATRHATLQGENGWYVYDSQVPEKGRGSVKWRTLLEQVLVRGGPRLYQKPAVTVE
GDVHHREIMSRIYDGTQELLPSEYMPLVQQLGLAESYDRQHISRILPLLALWPEETLAFT
LCVDSLLQRSFQRWLRDTLLQCEKNHRRRILIELAEADVCQHIDRLRPVLRLLSGLGCRL
AVSQAGLTVVSASYIKSLAVEIVKLHPGLVRGIDKRDENQLFVQSLTGACEGTRAKVFAA
SVRTNNEWQTLKERGILGGQGDFFAPPEPIDVGRKKYSRRYRV
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgcgatttaccactaaactgtctgcgctgatcaccctgcttgttgctctggcgatgttt
ttgatgctgatggggtgttcatacagtttcttctacgtgacacaggatcgtctggagcgc
cgcttcgattcgctggtgacgtcgctcgatcagtcaatgctgcatggttcccccgatgaa
cagcaacaatggttgccgctggtgatgcgcccgcttggcatcgtggccgtcagcgtcgat
agcggccgcaccaatctcttcacttataaactgccggctttgaagttgccctgggatttg
ctgaacggctgccggcaggtttcccggccgttgctgcagcacccgggcagttcgctccac
attacctatatcgatccattcgtcagcgatgtgcgctcgctgcaatccaccggggctgtc
acgctgtcgatcgtcgcgatggtggtgattttgttgttcagcctgcgctggctgcgtgag
caggccgagggagaagatcggctggagcgccgtgcgcgccgcattcttaacggtgaacga
gaaaacgtgatgcagggcgatgtgcgcgaatggccggccaacgtcagcggtgcgcttgat
cgcctgctggcggatttggcggaagcgcgtgaagcgcgcagccgggtcgatacgctgatc
cgcgcctttgccgcacaggacgcaaaaaccgggctgaacaaccgattgttttttgataac
caactggccactcaattggaggaggaaggctcgcacggcattgtcatgatggtgcggtta
cccgatttcgatacgctgcgggaaacccacggcaactcggcggtgcaggaactgatgtac
tcgctggtcaatctgctgtcgaccttcgtgatgcgctatccggcggcgctgttggcgcgc
tatttccacagtgatttcaccgtgctgttgccgcaccgcacgttgaaagaggcggacggc
attgccgcacagttggtgaatgccattgatgcactgccttcaacggcgcttatcgatcgc
gaaacgttcttgcatatcggcatagtggcgtatcgcagtgggcaaaccccggagcaggtg
attgattacgcggaacaggcaacgcgtcacgccacgttgcaaggggaaaacggctggtac
gtttacgacagccaggtgcctgaaaaagggcgcggcagtgttaaatggcgcaccctgctg
gaacaggtattggtacgaggcggcccacgcctgtatcagaaaccggcggtaacggtggaa
ggggacgttcatcaccgcgagatcatgagccggatttatgatggaacccaagagctgcta
ccctcggaatatatgccgctggtgcagcagttggggctggccgaaagttacgatcgtcag
catatcagccgcattcttcccttgttggcgctgtggccggaagagacgctggcatttacg
ctttgtgtcgattcattattgcagcgcagtttccagcgctggctgcgcgataccctgcta
cagtgtgaaaaaaaccaccgtcgacgaattctgattgaacttgcagaggcagacgtgtgt
caacatatcgaccgtttgcgaccggtgctgagattgctttcaggattggggtgtcgtctt
gccgtttctcaggcggggctaaccgtggtcagtgcctcttatatcaagtccttagcggta
gagatcgtcaaacttcacccgggtttagtgaggggaattgataagcgtgatgaaaatcag
ctgttcgttcagagcctgaccggtgcctgcgaaggcacccgtgccaaggtgtttgccgcc
agcgtgcggacgaacaacgaatggcagacgctgaaagaacgtgggatccttggcgggcaa
ggtgacttttttgcgccgccggagccgatagacgtggggcgcaaaaaatattcgcgtcgt
tatcgcgtttaa
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