Serratia plymuthica AS9: SerAS9_4936
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Entry
SerAS9_4936 CDS
T01503
Name
(GenBank) Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
srr
Serratia plymuthica AS9
Pathway
srr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
srr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SerAS9_4936
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srr03400
]
SerAS9_4936
Enzymes [BR:
srr01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
SerAS9_4936
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
SerAS9_4936
DNA repair and recombination proteins [BR:
srr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SerAS9_4936
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AEF48029
LinkDB
All DBs
Position
complement(5341877..5342686)
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AA seq
269 aa
AA seq
DB search
MPELPEVETSRRGIEPYLVGHSIQYAVVRNARLRWPVSEQILALSDRPVRSVQRRAKYLL
IELDHGWIIVHLGMSGSLRMLAEETEAGKHDHVDLVISNGMTLRYTDPRRFGAWLWCEDL
ANSNVLAHLGPEPLSEAFTGAYLYEKSRNKRTLIKPWLMDNKLVVGVGNIYASESLFTAG
ILPDRPAGSLSKTEAELLVETIKAVLLRSIEQGGTTLRDFLQSDGKPGYFAQELQVYGRA
GEPCRACGTPIESAKHGQRSTFFCRRCQR
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattaccagaagttgagaccagccgacgtggtattgaaccttatcttgtcggc
catagcattcagtatgcggtggtgcgcaacgcgcggctgcgctggcctgtttccgagcaa
attctggcgctgagcgaccggccggtacgcagcgtgcaacgccgcgccaagtatctgctg
attgaactggaccacggctggattatcgtccatttggggatgtccggcagcctgcgtatg
ctggccgaggaaaccgaagccgggaagcacgaccatgttgatctggtgatcagcaacggc
atgacgctgcgttataccgatccccgtcgttttggcgcctggctgtggtgcgaagatttg
gcgaacagcaatgtgctggcccaccttgggccggaaccgctaagtgaagcctttactggc
gcctacctgtacgaaaagtcacgcaataagcgcacgttgatcaaaccctggctgatggat
aacaagctggtcgtgggggttggcaatatctacgccagcgaatcactgtttaccgccggg
atcctgcccgatcgcccggccggttcgctgagcaaaacggaagctgagctgctggtggaa
accattaaagcggtattgctacgctcgattgagcaaggtggcaccacgctgcgcgatttc
ctgcagtcggacggtaaaccgggctatttcgcgcaagaattgcaggtgtatggtcgtgcg
ggggagccttgccgcgcgtgcggcacgccgattgaatcagctaaacacgggcagcgcagc
accttcttctgccgccgctgccaacgctga
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