Serratia sp. AS12: SerAS12_0435
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Entry
SerAS12_0435 CDS
T01502
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
srs
Serratia sp. AS12
Pathway
srs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SerAS12_0435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srs03019
]
SerAS12_0435
03009 Ribosome biogenesis [BR:
srs03009
]
SerAS12_0435
Enzymes [BR:
srs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SerAS12_0435
Messenger RNA biogenesis [BR:
srs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SerAS12_0435
Ribosome biogenesis [BR:
srs03009
]
Prokaryotic type
rRNA helicases
SerAS12_0435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
UTP25_NTPase-like
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
AEF48543
LinkDB
All DBs
Position
483958..485931
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AA seq
657 aa
AA seq
DB search
MTTELETSFADLGLSAPIISALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAA
FSLPLLHNLDASLKAPQILVLAPTRELAVQVAEAMTDFSKHMTGVNVVALYGGQRYDVQL
RALRQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPA
EHQTALFSATMPEAIRRITRRFMKDPQEVRIQSSITTRPDISQSYWTAQGMRKNEALVRF
LEAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDIL
IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN
IERTMKLTIPEVELPNAELLGERRLAKFAAKVQQQLESSDLDMYRALLAKLQPEEELEME
TLAAALLKMAQGERPLILPPDPVFKPRQRREFNDRDERGSDRGNDRRREARPDSRDGGAE
RPRRERRDVGEMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAGHSTIELP
KGMPGEILSHFTRTRILNKPMNMQLLGDAQPHERRERREGGAPGAGGERRGGARPFNGER
REGAGAGAPRRSFSERREGGAPAATGERRGNASRDGQRAPRRDDAAPAAPRRRFGDA
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgactactgagcttgaaacctcttttgctgacctggggctgtctgctcctatcatttct
gccctgaccgatctgggctacgaaaaaccgtcaccgatccaggctgagtgtattcctcac
ctgttgaacggccgtgatgtgctgggcatggcacagaccggtagcggtaaaactgcagcg
ttctcgctgccactgctgcacaaccttgacgcttccctgaaggcaccacagattctggtg
ctggcgccgacccgcgaactggcggttcaggttgctgaagcgatgactgatttctctaaa
catatgactggcgttaacgttgttgccctgtacggcggccaacgttacgacgtgcagctg
cgcgccttgcgtcagggcccacaaatcgtagtgggtaccccaggccgtctgctggaccac
ctgaaacgcggcacgctgaacctctctaacctgagcggtctggtgctggatgaagccgac
gaaatgctgcgcatgggctttatcgaagacgtagaaaccatcatggcggagatcccggct
gaacatcagaccgcgctgttctctgcaaccatgccggaagcgatccgtcgcattacccgt
cgcttcatgaaagatccgcaggaagtgcgcattcagtccagcatcactacccgtccggac
atcagccagagctactggactgcgcaaggcatgcgcaagaacgaagcgctggtgcgtttc
ctggaagctgaagactttgatgcggcgatcatcttcgtgcgtaccaaaaacgcgaccctg
gaagtggctgaagcgctggagcgcagcggttacagcagcgccgcactgaacggcgacatg
aaccaggcactgcgtgagcagaccctggagcgtctgaaagacggtcgtctggatatcctg
atcgctaccgacgttgccgctcgtggtctggacgttgagcgtatcagcctggttgtgaac
tacgacatccctatggattccgagtcttacgttcaccgtatcggccgtaccggtcgtgct
ggtcgcgccggccgcgcgctgctgttcgtggaaaaccgcgaacgccgcctgctgcgcaac
atcgaacgcaccatgaagctgaccattccagaagttgaactgccgaatgcagagctgctg
ggtgagcgtcgtctggccaagttcgccgctaaagtacagcaacagctggaaagcagcgat
ctggacatgtaccgcgcactgctggctaaactgcagccggaagaagagctggaaatggaa
accctggccgcagcactgctgaaaatggcgcagggcgaacgtcctctgattctgccaccg
gatccggtgttcaaaccgcgtcaacgtcgtgagttcaacgaccgtgacgagcgtggctct
gatcgtggcaacgaccgtcgccgtgaagcgcgtccagacagccgtgacggtggtgctgag
cgtccacgtcgcgaacgtcgtgacgttggcgaaatgcagctgtaccgcattgaagtgggc
cgtgatgacggcgtggaagttcgtcatatcgttggcgcgatcgctaacgaaggtgatatc
agcagccgttacatcggtaacatcaagctgtttgccggccattccaccatcgaactgcca
aaaggcatgccgggcgagatcctgtctcacttcacccgtacccgcatcctgaacaagccg
atgaacatgcaattgctgggcgatgcacagccgcatgaacgtcgtgagcgtcgcgaaggc
ggtgctccaggtgcaggtggcgagcgtcgtggcggtgctcgtccgttcaacggtgaacgc
cgtgaaggtgccggcgccggtgctccgcgtcgttctttcagtgagcgtcgcgaaggcggt
gctcctgctgcaactggcgaacgtcgtggcaacgccagccgtgacggtcaacgcgcaccg
cgtcgtgatgatgccgctccggctgcaccacgtcgccgtttcggtgatgcataa
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