Serratia sp. AS12: SerAS12_3965
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Entry
SerAS12_3965 CDS
T01502
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
srs
Serratia sp. AS12
Pathway
srs03030
DNA replication
srs03430
Mismatch repair
srs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
srs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SerAS12_3965
03430 Mismatch repair
SerAS12_3965
03440 Homologous recombination
SerAS12_3965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
srs03032
]
SerAS12_3965
03400 DNA repair and recombination proteins [BR:
srs03400
]
SerAS12_3965
Enzymes [BR:
srs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SerAS12_3965
DNA replication proteins [BR:
srs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SerAS12_3965
DNA repair and recombination proteins [BR:
srs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SerAS12_3965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AEF52016
LinkDB
All DBs
Position
complement(4232750..4236238)
Genome browser
AA seq
1162 aa
AA seq
DB search
MAEPRFIHLRVHSDYSMIDGLAKIGPLVKRAAALAMPALAITDFTNLCGLVKFYGSAHGA
GIKPIIGADFHVQSEVLGDELAQLTVLAANNDGYQNLTLLISRAYQRGYGAAGPIIDRDW
LIEHREGLILLSGARQGDVGKFLLRGNQQQVDQCLDFYQQYFPDSYYLELIRTGRPDEEN
YLHAAVALATERGLPVVATNDVRFLVEDDFDAHEIRVAIHDGFTLDDPKRPRNYSTQQYM
RSADEMCELFADIPEALLNSVEIAKRCNVTIRLGEYFLPQFPTGDMTTEDFLVLKSKEGL
EERLEFLFPDPEVRAQRRPEYDERLDIELRVINQMGFPGYFLIVMEFIQWSKDNDVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIEHVAE
MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLEKAFAAEPQ
LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINARRAKSGLEPIDIAAIPLEDKKSFDML
QRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
ISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKNPVEM
AKQRGGFEDGAKSRGIDGELSVKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGQYHFHVNDEGEIVYGIGAIKG
VGEGPIEAILEARNSGEQGYFKDLFDLCARSDVKKLNRRILEKLIMSGAFDRLGPHRAAL
MSSLGDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYANVPRWQEQVVLDGERETLG
LYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLVIASRVMVTKRGNRIGICT
LDDRSGRLEVMLFTDALEKYQHLLEKDRILIASGQVSFDDFSGGLKMTARELMDISEARE
KYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQREDARAKLRFGATWRVTP
TDRLLIDLRTLVGNEQVELEFD
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atggccgaacctcgttttattcacctgcgcgttcatagtgactactccatgattgatgga
ttagccaagatcgggccgttggtgaaaagagccgccgcgttagccatgcctgctttggca
attaccgatttcaccaacctgtgcgggttggtcaagttctatggcagcgcgcacggcgcc
gggatcaaaccgattatcggcgcggattttcatgtgcaaagcgaagtgctgggcgatgag
ctggcgcagctcaccgtactggccgccaataatgacggttatcaaaacctgacgctgctg
atttcccgcgcttaccagcgtggttacggcgctgccggcccgattattgaccgcgactgg
ctgatcgaacaccgtgagggattaattctgctttctggtgcccgtcagggtgacgtcggc
aagtttttgctgcgcggtaaccagcaacaggtagatcagtgcctggacttctatcagcaa
tatttcccggacagctattatcttgaactgatccgtacaggccggccggacgaagaaaac
tacctgcatgcagccgtagcgctggcgaccgaacgtgggttgccggtggtggccaccaac
gacgtgcgttttctggtagaggatgattttgacgcccatgagatccgcgtcgccatccat
gacggtttcacgcttgacgatcccaaacgcccgcgcaactacagcacgcagcaatatatg
cgcagcgcagacgagatgtgcgagctgtttgccgacatccccgaagcgttgctcaacagc
gttgaaatcgccaagcgctgcaatgtcaccatccgtctcggcgaatacttcctgccgcag
ttcccgaccggtgatatgaccaccgaggatttcctggtactcaaatcgaaggaagggctg
gaagagcgcctggagttcctgttcccggatccggaagtgcgcgcacagcgccgccctgaa
tacgacgaacgtctggatattgagctgagagtgatcaaccagatgggcttcccgggctac
ttcctgatcgtaatggaattcatccagtggtcgaaagataacgacgtgccggtagggccg
ggacgcggttccggtgccggttcactggtggcctatgcgctgaaaatcaccgatcttgat
ccgctggaatttgatttgctgttcgaacgtttccttaacccggaacgtgtttcgatgccc
gacttcgacgtcgacttttgcatggaaaaacgcgatctggtgattgagcacgtggcggag
atgtatggccgcgaggcggtatctcagatcattaccttcggcaccatggcggccaaagcg
gttattcgcgacgtgggccgcgtgctgggtcacccctatggtttcgtcgatcgcatctcc
aagctggtgccgcccgatccgggcatgacgctggaaaaggcgtttgccgccgaaccgcaa
ctgccggaaatttacgaggctgacgaagaagtcaaagcgctgatcgacatggcgcgcaag
ctggaaggggtgacgcgtaacgccggtaagcacgccggtggcgtggttattgcgcctacc
aagatcaccgacttcgcgccgctgtactgcgatgccgaagggaatcacccggtcacccag
tttgacaagaatgatgtggaatacgccgggctggtgaagttcgacttccttggcttgcgc
accctgaccatcatcgactgggcgctggggatgatcaatgcccggcgagcgaaaagcggg
ctggaacccattgatatcgcagctattccgctcgaagacaaaaaaagcttcgatatgctg
cagcgctcggaaaccactgcggtattccagctcgaatcacgcggcatgaaggatctgatc
aagcgcctgaaacccgactgtttcgaagatatgatcgcactggtagcgctgttccgtccg
ggcccgctgcagtcaggcatggtggataacttcatcgaccgcaaacacggccgcgaagag
atttcttacccggatatccagtggcagcatgagtcgcttaagccggtgctggaaccgacc
tatggcatcatcctgtaccaggaacaggtcatgcagattgcccaggtgctggccggctat
acgctgggcggcgcggacatgctgcgtcgtgcgatgggtaaaaagaacccggttgaaatg
gccaagcagcgcggcggtttcgaagatggggcaaaatcgcgcggcatcgacggtgaactg
tcggtaaaaatcttcgatctggtagagaaattcgccggttacggctttaacaaatcgcac
tctgccgcctatgcactggtgtcctaccagacgctgtggttaaaggcccactatccggcc
gagtttatggcggcggtaatgaccgccgatatggacaacaccgacaaggtcgtggggttg
gtggatgaatgctggcgcatgggcctgaaaatcctgccgccggacattaacagcggccag
taccatttccacgtcaacgatgaaggcgagatcgtttacggtatcggcgcgatcaaaggc
gtcggagaagggccgattgaagccattctcgaagcgcgaaacagcggggagcagggctac
tttaaagacctgttcgatctctgtgcgcgctccgatgtcaaaaaactcaaccgccgaatt
ctggaaaaactgatcatgtccggggcattcgaccgccttggaccgcatcgcgccgcgctg
atgagctcactgggcgacgcgttgaaagcagccgatcagcatgcgaaagccgaagctatc
ggccaggtggacatgtttggcgtcctggcggaagcgccggaacaagtggagcaatcctac
gccaatgtgccccgctggcaggagcaggtggtgctggatggtgaacgggagacgttgggg
ctatacctgaccggccacccgatcacccagtacctgaaggagatcgaacgttacgccggt
ggccagcgtttgaaagatatgcacccgacggatcggggcaaaatgacgaccgccgttggg
ctggtgatcgcctcgcgggttatggtcaccaagcgcggtaaccgcatcgggatttgtacg
ctggatgaccgttcaggccgtctggaagtgatgttattcaccgatgcgttagaaaaatac
cagcatttgttggaaaaagaccgtatcctgatcgccagtggacaggtcagctttgatgac
tttagcggcgggcttaaaatgacggcccgcgaactaatggacatcagtgaagcccgtgaa
aaatacgctcgtgggcttgctatctcgctgacggacaggcaaattgatgaccagcttttg
aaccgtctccgtcagtcgttggaaccccatcgctcggggacgattccagtgcatctttac
tatcaacgggaagatgcgcgggccaagctgcgttttggcgcaacctggcgcgtgacgccc
accgaccgcttgttgatagatttgcggactttggtaggtaatgagcaggtggaactggaa
tttgactaa
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