Serratia sp. AS12: SerAS12_4004
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Entry
SerAS12_4004 CDS
T01502
Name
(GenBank) exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
srs
Serratia sp. AS12
Pathway
srs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
srs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
SerAS12_4004
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srs03400
]
SerAS12_4004
Enzymes [BR:
srs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
SerAS12_4004
DNA repair and recombination proteins [BR:
srs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SerAS12_4004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AEF52055
LinkDB
All DBs
Position
complement(4277189..4280740)
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AA seq
1183 aa
AA seq
DB search
MTEVAPQRLDPLTLPLFGERLIEASAGTGKTFTIGALYLRLLLGLGQASAIPRRLTVEEI
LVVTFTEAATEELRGRIRSNIHALRIACVRGLSKDPLLSALMEEIDDLPDAAAQLLAAER
QMDEAAIYTIHGFCQRMLTHNAFESGILFEQTLVQDELPLRRQACADFWRRHCYPLPLGV
ARAVSQEWSGPEALLADISGYLSGEAPTLRRPPKDEETVLMRHEQIVARIDAIKAQWQAA
AGDLEALISQSGVDKRSYSSKHLPNWLNKVGEWVVMETQDYQLPKELEKFRQSVLLDKTK
KGDPPRHALFVAIDELFDEPLTLRDLIMARALSEIRLSIQQEKRQRAELGFDDLLSRLDS
ALQSEGGERLAQAIRQRYPVAMIDEFQDTDPQQYRIFQKLYVGRPECGLLLIGDPKQAIY
AFRGADIFTYMRARSEVSAHYTLETNWRSSPAMVGSVNHLFTQVEKPFLFGQIPFIEVAA
AEKNRGLAFELNDQPQPAMQFWLQQGEGVGVSEYQQLMARLCATQIRDWLSAGQRQQAWL
VDGEKRRAVQASDITVLVRSRNEAALVRDALSALAIPSVYLSNRDSVFDTPEAKDLLWLL
QAVLAPEQERTLRSAMATGLMGLDAQALDGLNRNERAWDMLVNEFDEYRTLWLRRGVLPM
LREVMNERHLAENLLASPGGERRLTDVMHLGELLQEASAQLDSEHALVRWLAQQIAQPNR
QSDNQQLRLESDRHLVKVITIHKSKGLEFDLVWLPFVGNFRQQQQVLYHDRQSFQALLDL
NADEESIEWAEEERLAEDLRLLYVALTRSVYHCSIGIAPLIQGTRKKQGDTDLHRSALGY
LVQAGQAGDAAWLQQRLQQLAGGGIALSLVEQLDEQAWLPQAPALTELAAKSFTRPVQYF
WRVTSYTGLQQHGSGLMQDLLPRLDVDAAGEQALDSEPALTPHTFPRGAAPGTFLHSLFE
TLDFTQPLDEQWLFEQLQQQGFAEHWQPILLAWMQVLLNVPLNDAGVSLSALAPQYKQAE
LQFYLPIEKLLRAGELDKLVKNYDPLSARCPALDFQQVQGMLKGFIDLVFCWQGKYYLLD
YKSNWLGEDSSAYTRAAMEQAMAEHRYDLQYQLYTLALHRYLRHRLPDYDYQRDFGGVIY
LFLRGVDAQHPGNGIFACRPELQLVEGMDRLFSGEAIAAEGEP
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atgacagaggttgccccgcagaggcttgatccgctgacgctgccgctgtttggcgaacgg
ctgatagaagcgtctgcggggaccggcaaaacctttaccataggcgcgctgtatctgcgt
ctgctgcttggcctgggccaagcgtcggccattccccggcggctgacggtggaagagatt
ctggtggtgacctttaccgaggctgccaccgaagagctgcgtgggcgtattcgcagcaat
atccatgcgttacgcattgcttgcgtccgcggtctcagcaaggaccccttgttgtctgcg
ctgatggaggagattgacgatctgcccgatgccgccgcgcaactgctggcggccgaacgg
cagatggacgaagcggcgatctacaccatccacggcttttgccagcgcatgctgacccac
aacgccttcgagtccggcattctgtttgagcaaacgctggtgcaggatgaattgccgcta
cggcgtcaagcttgtgcagatttctggcgtcgccattgttatccgttgccgctgggtgtc
gcccgggcggtgagccaggagtggagcggcccggaggcactgctggccgatatttccggc
tatctgagcggcgaagcgccaacgctgcgtcggccaccgaaagatgaagaaacggtattg
atgcgccatgagcagatcgtggcgcgcattgatgctatcaaagcacagtggcaggcggcg
gcgggggatctggaggcgttaatcagccagtccggcgtggataagcgcagctacagcagt
aaacacttgcctaattggttgaataaggtgggtgaatgggtggtgatggaaacccaggat
taccaattgccgaaagagctggaaaaattccgtcagtcagtgctgctggataaaaccaaa
aagggcgatccgccccgccatgccttgtttgtggcaatagatgaattgtttgatgagccg
ctgacgctgcgcgatttgattatggcgcgggcgctgagtgagatacgtctctccattcaa
caggaaaaacggcagcgcgccgaactgggttttgacgatctgctaagccggctggacagt
gcgctgcaaagtgaaggcggcgaacggttggcgcaggcgattcgccagcgttatccggtg
gcgatgatcgatgagttccaggataccgatccacagcaataccgtatcttccaaaagctc
tacgtcggccggccggaatgcggcctgttgctgataggcgacccgaaacaggctatttat
gccttccgcggtgccgatatctttacctatatgcgcgcccgttctgaggtaagcgcccac
tacacgcttgagactaactggcgctcgtcaccggcaatggtgggcagcgttaaccatctg
tttactcaggtggaaaaacccttcctgttcggtcaaattccttttattgaggtggccgct
gccgagaaaaatcgcgggttggcgtttgagctgaatgatcagccacagccggcgatgcag
ttttggctgcagcagggtgaaggcgttggcgttagtgagtaccaacaattgatggcgcgc
ctgtgcgccacgcaaatccgtgactggctcagtgccgggcaacgtcagcaggcctggctg
gtggacggcgaaaagcggcgggcggtgcaggcttccgatattaccgtgctggtgcgcagc
cgcaatgaggcggcgttggtgcgtgatgcgctcagcgctctggccatcccgtcggtctat
ttgtccaaccgcgacagcgtgtttgatacgccggaagccaaggatttgctgtggctgttg
caggcggtgctggcgccggagcaggagcgcacgctgcgcagcgccatggcgaccgggctg
atggggttggatgcgcaggcgctggacggcttgaatcgcaacgaacgcgcctgggatatg
ctggtcaatgagttcgatgaataccgcacgctctggctgcgccgtggcgtcttgcccatg
ctgcgtgaggtgatgaatgagcgccacctggcggaaaatctgctggccagccccggcggc
gagcgtcgattgaccgacgtgatgcacttgggggagctgttgcaagaggcctctgcgcaa
ctcgacagcgaacatgcgctggtgcgctggctggcacagcagattgcccagccaaatcgc
caatccgacaaccagcaactgcggctggagagcgatcgccatctggtgaaggtgatcacc
atccataaatcgaaagggttggagttcgatctggtctggttgccgttcgtcggcaatttc
cgccagcagcagcaggtgctgtaccacgatcggcagagtttccaggccctgcttgacctt
aacgccgatgaagaaagtatcgaatgggcggaagaagagcggttggcggaggatttgcgc
ctgctgtacgtagccttgacccgttctgtataccactgcagtatcggcatagcgccattg
atccagggcacacgcaagaaacagggtgataccgatttgcaccgcagcgcgctgggttac
ctggtgcaggccggccaggccggagatgcggcctggctgcaacaacgtctgcagcaactg
gctggagggggaattgcgctgtcgttggttgaacaactggatgaacaggcctggctgccc
caagcgccagcgttaaccgagctggcggcaaaaagtttcacgcgcccggtgcagtatttc
tggcgcgtgaccagttacaccggcctgcagcaacacggctctggcctgatgcaggatctg
ctgccacggctggatgtcgacgccgcaggcgaacaggcgctggacagtgagccagcgctc
acaccgcataccttcccgcgcggcgcagcgccgggaaccttcctgcacagcctgtttgaa
acgctggatttcactcaacctcttgatgagcaatggctgtttgaacagttgcaacagcaa
gggtttgctgagcactggcaaccgatactgctggcatggatgcaggtgttgctgaatgtc
ccgcttaatgatgccggtgtttcgttgtcggcgctggcaccgcagtataaacaggccgag
ctgcagttttacttacccatagaaaaactgttgcgggcgggtgagctggataagttggtg
aaaaattacgatccgctttcagcacgctgcccggcgctcgatttccagcaggtgcaggga
atgttgaaggggtttatcgacctggtattttgctggcagggaaaatactacctgctggat
tacaaatccaactggttgggagaggacagcagcgcttatacccgtgcggcgatggagcag
gcgatggcggaacaccgctacgatctgcaatatcagctgtacacgttggcactgcatcgt
tatctgcgccatcggttaccggattatgactatcagcgcgactttggcggggtgatttat
ttgttcctgcgcggggtagacgcacagcacccgggcaacggcattttcgcctgtcgccca
gagctgcagttggtggaaggtatggaccgcctgttcagcggcgaagccattgcggcggag
ggtgaaccatga
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