Segniliparus rotundus: Srot_0685
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Entry
Srot_0685 CDS
T01238
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
srt
Segniliparus rotundus
Pathway
srt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Srot_0685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
srt03021
]
Srot_0685
03019 Messenger RNA biogenesis [BR:
srt03019
]
Srot_0685
Transcription machinery [BR:
srt03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Srot_0685
Messenger RNA biogenesis [BR:
srt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Srot_0685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
Spore_III_AA
NACHT
AAA_22
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ADG97167
UniProt:
D6ZDA3
LinkDB
All DBs
Position
670883..672727
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AA seq
614 aa
AA seq
DB search
MTDTDLMTAPAAGPKLNTMVLAELRAIASGLGLTGISGMRKGELIEAIEGKRRGAVAGKP
KSRPADQEPAAQEPAAQQASAAPVQAADRAERNGAGHAIANGAAAAENNPADNSRDENNR
DDNNAEQSDERRSSRSSRRRRSGARRSDQEHDNAAPDEAEKGSRERENGHSASDASVAQS
SARAAYAEADDDEEGGRGRRGRRFRDRRRGRGERGENDAVAAPREDDVLQPVAGILDLMD
NYAFLRTSGYVPGQGDVYVSMNMIRKYGLRRGDAIVGAVKAPKDSGQSGDGGNNQRQKFN
PLVRIDSVSGIEPERALRRPDFTKLTPLYPNQRLRLETTPDKLSTRVIDLIMPIGKGQRA
LIVAPPKAGKTTILQDIANAIAQNNPECYLMVVLVDERPEEVTDMQRSVRGEVIASTFDR
PPSDHTMVAELAIERAKRLVELGRDVVVLLDSITRLGRAYNNASPASGRILSGGVDATAL
YPPKRFLGAARNIENGGSLTIIASALVETGSTGDTVIYEEFKGTGNAELKLDRKVAERRV
FPAVDVNPSNTRKDELLLGSDEFQVVHKLRRLLSGLDTHQAIDLLISQLRKTKSNVEFLV
QVSKTAPGQLDQDN
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgatacggatctgatgaccgctccggccgctggccccaagttgaacaccatggtc
ctcgccgagctgcgggcgatcgcctccggcttaggcctgacgggcatctccggtatgcga
aagggcgagctcatcgaagcgatcgagggcaagcggcgtggcgccgtggccgggaagccc
aaatctcgcccagccgaccaggagccagccgcccaggagccggccgcccagcaggcgtcc
gccgcgccggtgcaggcagccgacagggccgagcgcaacggcgcgggacacgccatcgcc
aacggggccgccgccgcggagaacaatcccgctgacaacagccgggacgagaacaaccgg
gacgacaacaacgccgagcagtcggacgagcgccgctcctcccgcagctcccgccgccgc
cgctctggcgcgcgccgttcggaccaggaacacgacaacgccgcccccgacgaagccgag
aagggctcgcgcgagcgggagaacgggcattcggcttcggacgcctccgtcgcccagtcc
tctgcccgcgccgcgtacgccgaggcggacgacgacgaggaaggcggtcggggccgccgg
ggccgacggttccgcgaccgccgtcgcggccggggcgagcgcggcgagaacgacgctgtc
gccgctccgcgcgaggacgacgtgctccagcccgtcgcggggatcttggacctcatggac
aactacgctttcttgcgcacctccggctatgtgccgggccaaggcgacgtctacgtttct
atgaacatgatccgcaaatacggccttcgccggggcgacgcgatcgtcggcgcggtgaaa
gcccccaaggactccggtcagtcgggcgacggcggcaacaatcagcggcagaaattcaac
cctctggtgcgcatcgactcggtgagcgggatcgagccggagcgcgccctgcgccgaccg
gacttcaccaagctcacgccgctgtacccgaaccagcgcctgcggcttgagacgactccg
gacaagctctccactcgcgtgatcgatttgatcatgcccatcggcaaggggcagcgcgcg
ctcatcgtcgcgccgcccaaagcgggcaagaccacgatcctgcaggacatcgccaatgcc
atcgcccagaacaacccggagtgctacctcatggtggtccttgtggacgagcgcccggag
gaagtcaccgacatgcagcgctcggtgcgcggcgaggtgatcgcatcgaccttcgaccgg
ccgccgagcgatcacacgatggtcgccgagctcgccatcgaacgggccaaacggctcgtg
gagctcggtcgggacgtcgtggtcctgctcgactccatcaccaggctcggccgcgcctac
aacaacgcctccccggcctcgggccgcattctctccgggggcgtcgacgccacagcgctc
taccccccgaagcggttcctcggggccgcccgcaacatcgagaacggcggctcgctcacc
atcatcgcctcggcgctggtggagaccggatcgaccggcgacaccgtcatttacgaggag
ttcaaaggcaccggcaacgcggagctcaaactcgaccgcaaggtcgcggagcgccgagtg
ttccccgctgtggacgtcaatccctcgaacacccgcaaggacgagctgctgctcggctcg
gacgagttccaggtcgtgcacaagctgcgcaggctgctctccggcctggacacccaccag
gccatcgacctgctcatctcgcagttgcgcaagaccaagtccaacgtcgagttcctggtc
caagtctccaagaccgccccggggcaactggaccaagacaactag
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