Segniliparus rotundus: Srot_1686
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Entry
Srot_1686 CDS
T01238
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
srt
Segniliparus rotundus
Pathway
srt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Srot_1686
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srt03019
]
Srot_1686
03009 Ribosome biogenesis [BR:
srt03009
]
Srot_1686
Enzymes [BR:
srt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Srot_1686
Messenger RNA biogenesis [BR:
srt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Srot_1686
Ribosome biogenesis [BR:
srt03009
]
Prokaryotic type
rRNA helicases
Srot_1686
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ADG98147
UniProt:
D6Z867
LinkDB
All DBs
Position
complement(1677538..1679184)
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AA seq
548 aa
AA seq
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MNSESSADTTFADLELHPSVLKAVQEVGYETPSPIQAKTIPALLNGQDVVGLAATGTGKT
AAFALPVLSRIDPKLRRPQALVLAPTRELALQVAEAFGRYASKLPQVSVVCVYGGGSYPV
QLQALARGSQVIVGTPGRVVDHLERGTLKLGDLKFLVLDEADEMLKMGFQEDVERVLASA
SQDKQVALFSATMPGAIRKISKTYLRDPVEVTVKAATTTSENIEQRYTLVAHHRKLDLLT
RILEVEQFSAMIVFVRTKQATEDIAERLRARGFAARPLNGDIAQAARERTVSALRAGKID
ILVATDVAARGLDVERITHVFNYDVPHDTESYVHRIGRTGRAGRAGVSYLFVTPRERSMI
GAIERATRQALTEAPLPTVADVNAGRIAKFRDSITEALALPGVEQFRRLVEDYERENDVP
MADIAAALAAQTRSGEEFLLSDDPDESQQRKGPKQDRGGQRWNHRDGDDRGSREGRGSQG
RDFQGGRKPGFAKRSSGGFGGRSEGFAAGRRDFSGRRDQRGGSDQRGGFEQRGDKGGRKG
GGPRRGSW
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
gtgaactcagaatcttcggcagacaccaccttcgccgacctcgaactgcacccgtcggtg
ctcaaagcggtgcaagaagtcggctacgagacgccctcgccaattcaagccaagactatt
cccgccttgctcaacggccaggacgtcgtcggcctcgcggccaccggaaccggcaagaca
gctgcgttcgcgctgccggtcctctctcggatcgacccgaagctgcggcggccccaggcc
cttgtcctcgcgccgacccgcgaactcgcgctccaggtcgcggaggcttttggccgctac
gcgtcgaaactgccgcaggtgtcggtggtgtgcgtctacggcggcggctcgtacccggtg
cagctgcaggcgttggcccgaggctcccaggtgatcgtcggcacccctggtcgcgtggtg
gaccacctcgaacgcggcacgctcaaactcggcgatttgaagttccttgtgctcgacgag
gccgacgagatgctcaagatgggctttcaagaagacgtggagcgtgtgctcgcctcggct
tcgcaggacaagcaggtggcgctcttctccgcgacgatgccgggcgcgatccgcaagatc
tccaaaacatacctgcgcgaccccgtcgaggtgaccgtcaaagccgcgacgacgacgtcg
gagaacatcgagcagcgctacacgctggtcgcccatcaccgcaagctcgacctgttgacc
cggattttggaagtcgagcagttctcggcgatgatcgtgttcgtccggaccaaacaggcg
accgaagacatcgccgagcggttgcgcgcgcgcggcttcgcggcccgtccgctcaacggc
gacatcgcccaggccgcgcgcgagcggactgtgtccgccctgcgcgcgggcaagatcgac
atcttggtcgccaccgacgtcgccgcccgagggctcgacgtcgagcgcatcacccacgtc
ttcaactacgacgtgccccatgacacggagtcctacgtccaccgcatcggccggaccggc
cgggcgggccgcgccggggtctcgtacctgttcgtcactcctcgcgagcgctccatgatc
ggggcgatcgaacgggcgacccgccaggcgctcaccgaggcccccttgccgaccgtcgcg
gatgtgaacgctggccggatcgcgaagttccgcgactcgatcaccgaggcgctggctttg
ccgggggtggagcaattccgaaggctggtcgaagactacgagcgcgagaacgacgtgccg
atggccgatatcgcggccgcgctcgccgcgcagacccgcagcggggaagagttcctgctc
agcgacgacccggacgagtcccagcagcgcaaggggcccaagcaggatcggggcggacaa
cgctggaaccacagagacggcgacgaccggggatcgcgcgaagggaggggctcgcagggc
cgggacttccagggcggccgcaaaccgggcttcgcaaaaaggagctcgggcggcttcggc
ggccgttcggaagggttcgccgcggggcggcgtgacttctctggccgcagggatcagcgc
ggcggctccgatcagcgcggcggcttcgaacagcgcggggacaaaggcggccgcaagggc
ggcggcccgcgccgtggctcttggtga
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