Segniliparus rotundus: Srot_1988
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Entry
Srot_1988 CDS
T01238
Name
(GenBank) RNA-metabolising metallo-beta-lactamase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
srt
Segniliparus rotundus
Pathway
srt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Srot_1988
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srt03019
]
Srot_1988
Messenger RNA biogenesis [BR:
srt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Srot_1988
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
ADG98445
UniProt:
D6Z915
LinkDB
All DBs
Position
complement(2011039..2012778)
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AA seq
579 aa
AA seq
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MTDAHILDSLSAPPALADGALRVTALGGLGEIGRNMTVFEYGSKLLIVDCGVLFPEDRQP
GVDLILPDFSSIENRAEDIVGIVLTHGHEDHIGAVPFLLRVCPDLPVIGSKFTLALVAAK
CREHRQKPTFVEVTGGEQRQVDVFGLEFLTVNHSIPDALAVAIRTPAGVVLHTGDIKLDQ
IPLDGKLTDLAGMSRLGDAGVDLFLVDSTNAEVPGFVMPEREIGEVLDRVIGKAGQRVIV
ACFASHVHRVQQVIDVAVANGRKVAYVGRSMYRNMRIAQELGYLTVPQGVVVNMEKAAEL
QDSKVVLISTGSQGEPLSALSRMARGDHQSISIQSGDLVILASSLIPGNENSVFAVVNGL
TRLGAKVVTQQNAKVHVSGHASAGELLFLYNAVRPKNAMPVHGEWRHLRANGALAQATGI
PEKNVVLAENGVAVDLHGGVAKAVGKVPVGYVYVDGLSVGDVGESTLSERLILGEGGFIA
INVVVDSATGAAVSPPALLGKGFSDDPKALVAAQELVVAELAKLASERGPNAEFKKVDTH
QIAQSVRRAVGRWVSDAYRRRPMIVPTVTAVETGPAKSS
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgcgcacatcctcgacagcctctcggcccctcccgcgttggcggacggcgct
ttgcgggtgaccgctctcggcggtctcggcgagatcggccggaacatgaccgtcttcgaa
tacggcagcaaactgctcatcgtcgactgcggcgtccttttcccagaagaccgccagccc
ggagtcgatctcatccttcccgacttctcttcgatcgagaaccgggcggaagacatcgtc
ggcattgtcctcacccatgggcacgaggaccatatcggcgcggtgccgtttttgctgcgc
gtctgccccgacctgccggtcatcggctcgaagttcactcttgcgctggtcgccgcgaag
tgccgcgagcaccggcaaaagccgacgttcgtcgaggtgactggcggcgagcagcgccaa
gtcgacgtgttcggcctggagttcttgacagtcaaccattccattcccgacgcgctcgct
gtcgccatccgcacccccgccggggttgtgctgcacaccggggacatcaagctcgaccag
atcccgctcgacggcaagctcaccgacctcgcgggcatgtcgcggttgggcgacgcgggc
gtggaccttttcctcgtggactccaccaacgccgaggtgccgggattcgtcatgccggag
cgtgagatcggcgaagtgctcgaccgggtcatcggcaaggcgggccaacgtgtgatcgtc
gcctgtttcgccagccatgtccaccgagtgcagcaggtcatcgatgttgctgtcgcgaac
ggccgcaaggtcgcctatgtcggccgctccatgtaccgcaacatgcgcatcgcccaagag
ctcgggtatctcactgttccgcaaggcgtggtggtgaatatggagaaggcggccgagctg
caggattcgaaagtcgtgctcatctcgaccggctcgcagggcgagccgctttccgcgctt
tcccgcatggcgcgcggcgatcatcagagcatcagcatccagtccggggatcttgtcatc
ctcgcctcctcgctcatccccggcaatgagaactctgttttcgcagtggtgaacggactg
acccggctcggcgcgaaagtggtgacccagcagaacgcgaaagtccacgtctcgggccac
gcgtcggcgggcgagctgttgttcctctacaacgcggtgcggcccaaaaacgcgatgccg
gtgcacggggagtggcgccacttgcgggccaacggcgctctcgcgcaagcgaccggcatc
ccggagaagaacgtcgtgctggccgagaacggcgtcgcggtggacttgcacggcggggtc
gcgaaagccgtcggcaaagttcctgtcggctacgtgtacgtggatggtttgtccgtcggc
gacgtgggggaatcgaccctctccgagcggttgatcctcggcgagggcggattcatcgcg
atcaatgtcgtggtggactcggccaccggggccgcggtcagcccgcccgctttgttgggc
aaaggcttctcggacgatccgaaggcgctcgtggccgcacaggagctggtggtcgcggag
cttgcgaaacttgcctccgagcgtggccccaacgcggagttcaagaaggttgacacgcat
cagatcgcccagtcggtgcgccgcgcggtcggacgctgggtctcggacgcctaccggcgc
aggccgatgatcgtgccgactgtgaccgcggtggaaacgggccccgcaaagtcgtcgtaa
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