Segniliparus rotundus: Srot_2704
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Entry
Srot_2704 CDS
T01238
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
srt
Segniliparus rotundus
Pathway
srt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
srt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Srot_2704
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
srt03021
]
Srot_2704
03400 DNA repair and recombination proteins [BR:
srt03400
]
Srot_2704
Enzymes [BR:
srt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Srot_2704
Transcription machinery [BR:
srt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Srot_2704
DNA repair and recombination proteins [BR:
srt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Srot_2704
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
ADG99138
UniProt:
D6ZCV1
LinkDB
All DBs
Position
complement(2784167..2788144)
Genome browser
AA seq
1325 aa
AA seq
DB search
MIDVNYFDELRISLAGAEDIRRWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTKAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMAVEKKSVTDQRDVDLEERAQKLEAD
LAELEGEGAKAEAKRKVRDAGEREMRHIRERAQRELDRLDEVWTTFVKLSPRDMIVDEML
YNEISDRYGEYFTGAMGAEAIKTLIENLDIEAEADNLRETIRSGKGQKKLRALKRLKVIA
AFQATGKSPLGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIEL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLSHAQNVKSAKRMVERHR
PQVWDVLEEVISGHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPGSGRPLAMPRLDMVTGLYTLTLQKDDAKGAFT
AAKKDHHEEGVYTSPAEAIMALDRGVLSVQAPIKIRLTEQRPPAKLEAELFPEGWTRGQA
WTAHTTLGRVMFNELLPSDYPFVDEVMLKKRQAVIINDLAERYPMIVVAQTVDKLKDAGF
YWATRSGVTVSMADVLVPPNKREILDTYEGRADSLERKFQRGALTSEERRDGLVEIWKQA
TEEVGAALESHYPDDNPIIMIVKSGATGNMTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR
EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVVESDCGTERGINVAI
ATKGPDGSLIRDPHVETSAYARTLASDVTDAKGNVIVDRGSDVRDATIDELIGAGISQIK
VRSVLTCTTSNGVCAKCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTIHQGGVG
EDITGGLPRVQELFEARVPKAKAPIAEVSGRIRLEDDDRFYRITIIPDDGGEEVVYDKLS
KRQRLKVLRGEDGSESVLADGSHVEVGQQLLEGSSDPHEVLRVMGPRQVQIHLVHEVQEV
YRSQGVSIHDKHIEVIVRQMLRRVTIIDSGSSEFLPGSLTERGEFEAENRRIVAEGGEPA
AGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINTRSDKLIGLKENVIIGKLIPAG
TGVARYRQIEVQPTEAARAAAYSLPSFAEGYYGSDADYGVDYSAARYSHSGPAVPLDDYD
FSEYQ
NT seq
3978 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgacgtcaactacttcgacgagctccggatcagcctcgccggggccgaggacatc
cgccgttggtccttcggcgaggtgaaaaagccggagaccatcaactaccgcacgctcaaa
cccgagaaggacggccttttctgcgagaagatcttcggcccgaccagggactgggaatgc
tactgcggcaagtacaagcgggtccgcttcaaaggcatcatctgtgagcgctgcggcgtg
gaggtcaccaaggccaaagtgcgccgcgagcgcatgggccacatcgagctcgccgcgccg
gtgacccacatctggtacttcaagggcgtgccgagccgtctcggctacctgctcgacctc
gccccgaaggatcttgagaagatcatctacttcgccgcgtacgtcatcacctccgtggac
aacgagatgcgccacaacgagctctccactctggaggcggagatggccgtcgagaagaag
tccgtcaccgaccagcgcgacgtcgacctggaagaacgcgcgcagaagctcgaagccgac
ctcgccgagcttgagggcgagggagcgaaggccgaggccaagcggaaggtccgcgacgcg
ggcgagcgcgagatgcgccacatccgcgagcgcgcgcagcgcgaactcgaccgcctggac
gaggtgtggaccacgttcgtcaagctttccccgcgcgacatgatcgtggacgaaatgctg
tacaacgagatctccgaccgatacggcgagtacttcaccggcgcgatgggcgccgaggcc
atcaagacgctgatcgagaacctggacatcgaggcggaggccgacaacctgcgcgagacc
atccgctcgggcaaggggcagaagaagctccgcgcgctcaagcggctcaaggtcatcgcg
gcgttccaggccaccggcaaaagcccgctcgggatggtgctcgacgccgtgccggtgatc
ccgccggagcttcgcccgatggtgcagctcgacggcggccgcttcgcgaccagcgacctc
aacgacctgtaccgccgcgtgatcaaccggaacaaccgcctcaagcggctcatcgagctg
ggcgccccggagatcatcgtgaacaacgagaagcgcatgttgcaggagtctgtggacgcg
ctcttcgacaacggccgccgcggccgtccggtcaccgggccgggcaaccgtccgctcaag
tcgctgtccgacctcctcaagggcaagcagggccgtttccgccagaacttgctcggcaag
cgcgtcgactactccggccgttcggtcatcgtggtcggcccgcagctcaaactgcaccag
tgcggtctgccgaagctgatggcgctggagctgttcaagccgttcgtgatgaaacggctc
gtcgacctcagccacgcgcagaacgtgaaatccgccaagcgcatggtcgagcggcaccgc
ccgcaggtgtgggacgtcctcgaagaggtcatctccggccacccggtcctgttgaaccgc
gcgcccacgctgcaccgcctcggcatccaggccttcgagccgcagctcgtggagggcaag
gccatccagctgcacccgctcgtgtgcgaggccttcaacgccgacttcgacggcgaccag
atggccgtgcaccttccgctgtcggcggaggcgcaggccgaggcccgcatcctcatgctg
tcctcgaacaacatcctttcccccggttcgggccgcccgctcgccatgccccgcctggac
atggtcacgggcctgtacaccctgaccttgcagaaggacgacgcgaagggcgccttcacc
gccgcgaagaaggaccaccacgaggaaggcgtctacacgagcccggccgaggccatcatg
gccctcgaccgaggcgtgctgtcggtgcaggccccgatcaagatccggctcaccgagcaa
cgcccgccggccaagctcgaagccgaactgttccctgaggggtggacccgaggccaggcg
tggaccgcgcacacgacgctcggccgggtcatgttcaacgagctgctgccttcggactac
ccgttcgtggacgaggtcatgctcaaaaagcgccaggccgtcatcatcaacgacctcgcc
gagcggtacccgatgatcgtggtcgcgcagaccgtggacaagctcaaggacgccggtttc
tactgggcgacccgctccggcgtcaccgtgtcgatggccgacgtgctcgtgccgccgaac
aagcgcgaaatcctcgacacctacgagggccgcgcggacagcctggagcgcaagttccag
cgcggcgcgctcacctcggaggagcgtcgcgacggtctggtcgagatctggaagcaggcc
accgaagaggtcggggccgcgctggagtcgcactacccggacgacaacccgatcatcatg
atcgtgaagtccggcgcgaccggcaacatgacccagacccgcaccctcgcaggcatgaag
ggcctggtgacgaacccgaagggcgagttcatcccgcgtccgatcaagtcctccttccga
gagggcctgacggtgttggagtacttcatcaacacccacggcgcccgcaaaggcctcgcg
gacaccgcgctgcgcaccgctgactcgggttatctgacccgtcgcctggtggacgtgtcg
caggacgtgatcgtggtcgagtccgactgcggcacggagcgcggcatcaacgtggctatc
gcgaccaagggccccgacggctcgctgatccgcgacccgcacgtcgagaccagcgcctac
gcccggaccttggcttcggacgtcaccgacgcgaagggcaacgtgatcgtcgaccggggc
tccgacgtccgcgacgccaccatcgacgagctcattggcgccgggatctcgcagatcaag
gtccgttcggtcctgacctgcaccacgagcaacggcgtgtgcgcgaagtgctacggccgc
tcgatggcgaccggcaaactggtggacatcggcgaggccgtcggcatcgtcgccgcccag
tccatcggcgagccgggcacgcagctgaccatgcgcaccatccaccaaggtggtgtcggt
gaggacatcaccggcggtctgccccgtgtccaggagctgttcgaggcgcgtgtgcccaag
gccaaggccccgatcgccgaggtctccggccgcatccgcttggaggacgacgaccggttc
taccggatcacgatcatccccgacgacggcggcgaagaggttgtgtacgacaagctctcc
aagcggcagcggttgaaggtcctgcgcggcgaggacggctcggagagcgtcctcgcggac
ggctcgcacgtcgaggtcggccagcagctgctcgaagggtcctccgacccgcacgaggtg
ctgcgcgtcatgggcccgcgccaggtgcagatccacttggtccacgaggtccaagaggtg
taccgcagccagggcgtgtccatccacgacaagcacatcgaggtcattgtgcggcagatg
ctgcgcagggtcaccatcatcgactcgggctcctcggagttcctgccgggttccttgacc
gagcgcggcgagttcgaagccgagaaccgtcggatcgtcgccgagggcggcgagcccgcg
gcgggccgcccggtgctcatgggcatcacgaaggcgtcgctcgcgaccgactcgtggctg
tcggcggcctccttccaggagaccacccgcgtgctcacggacgctgcgatcaacacccgc
tccgacaagctcatcggcttgaaggagaacgtcatcatcggcaagctgatcccggctggc
acgggtgtcgcccgttaccgccagatcgaggtccagccgacggaggccgcgcgcgctgcg
gcgtactcgctgccgagtttcgcggaaggctactacggttccgacgcggattacggcgtg
gactacagcgctgcgcgctacagccactccggccccgctgtgccgttggacgactacgat
ttcagcgaataccagtga
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