Salinibacter ruber DSM 13855: SRU_0046
Help
Entry
SRU_0046 CDS
T00312
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sru
Salinibacter ruber DSM 13855
Pathway
sru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SRU_0046
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sru03019
]
SRU_0046
03009 Ribosome biogenesis [BR:
sru03009
]
SRU_0046
Enzymes [BR:
sru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SRU_0046
Messenger RNA biogenesis [BR:
sru03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SRU_0046
Ribosome biogenesis [BR:
sru03009
]
Prokaryotic type
rRNA helicases
SRU_0046
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
SWI2_SNF2
Flavi_DEAD
CMS1
Osmo_CC
AAA_30
Astro_VPg
Motif
Other DBs
NCBI-ProteinID:
ABC46146
UniProt:
Q2S6I0
LinkDB
All DBs
Position
41983..43419
Genome browser
AA seq
478 aa
AA seq
DB search
MAADISQSKYTNVIDLTSEAQQERRRDEVGSELREPDPPLDEVTVDELSGHMEQAVHAAG
WTELMDVQRKAIPYTLDGRDLIVQSQTGSGKTGAFLLPLFDLVNPDKEEQQVLILTPTRE
LARQIHEEFEQMKIATPRTNRMEAVLIYGGVGYQPQIDGLKNGAQVVIGTPGRILDHIKK
DNFDASTLRMLVLDEADEMLSMGFYPDMKDIVEHVPGDRVSYMYSATMPPKVRSVAREFL
DDPGFLSLSTDKVSVEENEYRYYLVNPMDKDRVMAQLLELEEPESALIFANTKREVSYLN
KFLSNKGYDIDEMSGDLSQRDREEALDRLREGKLRLLVATDVAARGIDVSDLSHVFIYDV
PQDHEYIIHRSGRTARAGEEGTTIVLSTHEDEYELKRMANTYDIELEKAELPADPHSEAR
ELLQERYANAEAPANGEEPGVEDFVPLVKELSDEQPELLASIITELYAEAKTEDEEEK
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atggctgccgatatttcgcagagcaagtacacgaacgtcatcgacctgacttctgaggcc
caacaggagcggcggcgcgacgaggttgggtcggagctgcgcgagccggacccgcccctg
gacgaggtcacggtcgacgagctgtccgggcacatggagcaggcggtgcacgccgccggc
tggacggagctgatggacgtgcagcgcaaggccatcccctacaccctcgacgggcgcgac
ctgatcgtgcagtcgcagaccggctcgggcaagaccggcgccttcctgctgccgctgttc
gacctggtgaacccggacaaggaggaacagcaggttctcatcctcacgcccacccgggag
ctggcgcggcagatccacgaggagttcgagcagatgaaaatcgcgacgccgcgcacgaac
cgcatggaggcggtcctcatttacggcggcgtcgggtaccagccgcagatcgacggcctg
aagaacggcgcgcaggtcgtcatcggcacgccgggccgcatcctcgaccacatcaagaag
gacaacttcgacgccagcaccctccggatgctggtgctcgacgaggccgacgagatgctg
tcgatgggcttctacccggacatgaaggacattgtcgagcacgtgccgggggaccgggtc
tcgtacatgtacagcgccaccatgccgccgaaggtgcggtccgtggcgcgcgaattcctg
gacgacccgggcttcctctcgctcagcaccgacaaggtgagcgtggaggagaacgagtac
cgctactacctggtcaacccgatggacaaggatcgggtgatggcgcagctcctggagctg
gaggagccggagtcggccctcatcttcgccaacacgaagcgggaggtgagctacctcaac
aagttcctctcgaacaagggctacgacatcgacgagatgtccggcgacctctcccagcgc
gaccgggaggaggcgctcgatcgactccgagaagggaagctccgcctgctggtggcgacg
gacgtggcggcccgcggcatcgacgtgtccgacctgagccacgtcttcatctacgacgtg
ccccaggaccacgagtacatcatccaccgctccggccgcacggcgcgggccggcgaagag
ggcacgacgatcgtcctctccacccacgaggacgagtacgagctcaagcggatggccaac
acctacgacatcgagctcgagaaggccgagctgccggccgatccgcacagcgaggcccgt
gagctgctccaggagcgctacgcgaacgccgaggccccggccaacggcgaagagccgggc
gtcgaggacttcgtcccgctcgtgaaagagctttccgacgaacagccggaactgctggcg
tccatcatcaccgagctgtacgccgaggcgaagacggaggacgaggaggagaagtga
DBGET
integrated database retrieval system
