Salinibacter ruber DSM 13855: SRU_0979
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Entry
SRU_0979 CDS
T00312
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sru
Salinibacter ruber DSM 13855
Pathway
sru03030
DNA replication
sru03430
Mismatch repair
sru03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SRU_0979 (dnaE)
03430 Mismatch repair
SRU_0979 (dnaE)
03440 Homologous recombination
SRU_0979 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sru03032
]
SRU_0979 (dnaE)
03400 DNA repair and recombination proteins [BR:
sru03400
]
SRU_0979 (dnaE)
Enzymes [BR:
sru01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SRU_0979 (dnaE)
DNA replication proteins [BR:
sru03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SRU_0979 (dnaE)
DNA repair and recombination proteins [BR:
sru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SRU_0979 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
ABC44341
UniProt:
Q2S3X0
LinkDB
All DBs
Position
complement(1247212..1250712)
Genome browser
AA seq
1166 aa
AA seq
DB search
MPNFSHLHCHTQYSLLDGAAGIDHLIESAERRDIPAVAITDHGNLYGVPEFYTTAQKSDV
QPIIGCEFYLTPSGIQDQSDPTRYHQVLLAKNQTGYENLMQLSSTSFLEGFYYKPRIDLD
LLRKHHEGLVATTCCLQGQVPQMILNQGEEAAQEKFEEYLDIFGDDYYIEIQDHDIDDQH
TVNEVLLQWARAYDVEVLATNDVHYVDQQDHEAQDILLCLQTGDDYNDPDRMRFSNDQFY
LKDSAGMMEALTGIPEEFQREALVNTNKVADKCSFDLPMGDLLMPHYPIPEGFEDMDGYL
RHLTFERAKERYGDPLPQTVVDRLNHELGIIADEGYSGYFLIVQDFTDAARELDVRVGPG
RGSAAGSCVSYCLGITNVDPLEYDLLFERFLNPERVSMPDIDIDFDDRGREKVIDYVVEK
YGQENVCQIVTFGTMGAKTAVRDVSRVLDIPLDRADEIAKMIPDGPGVDLEQAFDENPDF
RALKDANNPEVSKMMQYAEVLEGSVRHTGVHAAGVIIAPGEISDYVPVSVAKSKGEEVVT
TQYDGDWVEEFGLLKMDFLGLKTLTLIEDAVELVEDTRDVDLNIDDIPLDDEATFELFQR
GDTVSIFQFESTGMREHLRKLKPTEIGDLIAMNALYRPGPMENIPTYVARKHGQEEVEYP
HPLLEDILEPTYGIAVFQEQVMQMARELAGFSLGEADILRRAMGKKKEKLMRKQREKFIK
GCQAENDIPEDEADELFDIINEFAGYGFNKSHSAAYSLVAYRTAYLKAHYPPEFMAAAMT
NEMDNTDKLSKVLEEARSMGLEVLPPSINRSQSRFTVEQGPDGAYRVRFGLAAIKNAGEK
AINALIDAREEHGPFDSIFDLTKNVDLGTVNKRTLEALAQAGALDDLEGHRAQLMEIMDK
AVRYGQKVQHDRMAGQNSLFGNGDAGTEAMQPGLPDVETWAKSQRLKEEHEVLGFYVSGH
PLDEYRAEADAFATAHFGEPDQLEQVIEQAAGGDGRNRGPVRTFCGIITEVDRNTTKSGK
PIAFATIEDFTGQGEMVIFSSILDRVQPYLEVDNVVLAKGNVEVRGGTVKVLAKDLTPMW
KVREQMVSEVILTVDLDQVMPDELQTFRQLCERTEGNCTLYFDVDAPELRGQERLRSRAY
VVEPTAEFMRGAQRIFGPDNIALKGN
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgcccaacttttcccacctccactgccacacgcagtactccctgctcgacggcgccgcc
ggcatcgaccacctcatcgagagcgccgagcgccgcgacattccggccgtcgccattact
gaccacggcaacctctacggcgttccggagttctacaccacggcccagaagtccgatgtc
cagccaatcattgggtgcgagttttacctgacgccgagcggcattcaggaccaatccgac
ccgactcgctatcaccaggttctcctggcgaaaaaccagaccggctacgagaacctgatg
cagctctcctccacctccttcctggagggcttctactacaagccgcgcatcgaccttgac
ctcctccgcaagcaccacgaggggctcgtggccaccacctgctgcctgcagggccaggtg
ccgcagatgattctgaaccagggcgaggaggcggcccaggaaaagtttgaggagtacctg
gacatcttcggggacgactactacatcgagatccaggaccacgacatcgacgaccagcac
accgtcaacgaggtgctgctgcagtgggcccgggcgtacgacgtggaggtgctggccacc
aacgacgtccactacgtcgaccagcaggaccacgaggcacaggacatcctgctctgtttg
cagacgggggacgactacaacgaccccgaccggatgcgcttcagcaacgaccagttttac
ctgaaggactcggcgggcatgatggaggccctcacgggcatcccggaggagtttcagcgc
gaggcgctcgtcaacaccaacaaggtggccgacaagtgctcgttcgaccttccgatgggg
gacctcctgatgccccactaccccattccggaggggttcgaggacatggacgggtacctg
cgccacctcaccttcgagcgggcgaaggagcgctacggcgacccgctgccgcagacggtc
gtcgaccggctcaaccacgagctcggcattattgccgacgagggctactccggctacttc
ctcatcgtccaggacttcacggacgcggcccgcgaactcgacgtgcgcgtggggccgggg
cggggctccgccgccggcagctgcgtgagctactgcctcggcatcaccaacgtggacccg
ctcgaatacgaccttctcttcgagcgcttcctcaacccggagcgtgtgtcgatgcccgac
atcgacatcgacttcgacgaccggggccgcgaaaaggtgatcgactacgtggtggagaaa
tacgggcaggagaatgtctgccagatcgtcaccttcggcaccatgggcgcgaagaccgcg
gtgcgcgacgtgtcgcgcgtgctggacattccgctggaccgcgccgacgagattgccaag
atgatccccgacgggccgggcgtggacctcgaacaggccttcgacgagaaccccgacttc
cgcgcgctgaaggacgcaaacaacccggaggtcagcaagatgatgcaatacgcagaggtg
ctggaggggtcggtgcggcataccggggtccacgccgccggcgtcatcatagcccccggt
gagatcagcgactacgtgcccgtctccgtcgccaagagcaagggcgaagaggtggtcacg
acccagtacgacggcgactgggtggaggagttcgggctgctgaagatggacttcctcggc
ctcaagacgctcacgctcatcgaagacgccgtcgagctcgtcgaggacacccgcgacgtg
gacctcaacatcgacgacattccgctcgacgacgaggccacgttcgagctctttcagcgc
ggggatacggtctcgatcttccagttcgagtcgaccggcatgcgggagcacctccgcaag
ctgaagccgacggagatcggcgacctgatcgccatgaacgcgctctaccggccggggccg
atggagaacatccccacctacgtggcccgtaagcacgggcaggaggaggtggagtacccc
catccgctgctggaggacattctggagccgacgtacggcatcgccgtgtttcaggagcag
gtgatgcagatggcccgcgagctggccggcttctccctcggcgaggcggacatcctgcgc
cgcgcgatgggcaagaagaaggagaagctcatgcgcaagcagcgggagaagttcatcaag
gggtgccaggcggagaatgacatcccggaagacgaggcggacgagctcttcgacatcatc
aacgagttcgccgggtacggcttcaacaagtctcactcggccgcctactcgctggtcgcc
taccgcacggcctacctgaaggcccactacccgccggagtttatggcggcggcgatgacc
aacgagatggacaacaccgacaagctgtcgaaggtgctggaggaggcgcgcagcatgggc
ctggaggtgctcccgccctccatcaaccggagccagtcgcgcttcacggtggagcagggc
ccagacggcgcgtaccgcgtccgcttcggcctcgcggcgatcaaaaacgcgggcgaaaag
gcaatcaacgccctgatcgacgcccgggaggaacacggccccttcgactccatcttcgac
ctcacgaagaacgtggacctcggcacggtcaacaagcgcacgctggaggcgctcgcccag
gccggggccctcgacgacctggagggccaccgcgcgcagctcatggagattatggacaag
gccgtgcgctacggccagaaggtgcagcacgaccgcatggccggtcagaactcgctcttc
ggcaacggcgacgcgggcaccgaggcgatgcagccgggcctgccggacgtggaaacctgg
gccaagtcgcagcgcctgaaggaggagcacgaggtgctgggcttctacgtctccggccac
ccgctcgacgagtaccgcgccgaggccgacgccttcgccaccgcccacttcggcgagccg
gaccagctcgaacaggtcatcgaacaggccgccgggggcgacggccgcaaccgggggccc
gtccgcaccttctgcgggatcattaccgaggtggaccgcaacaccacaaagtccggcaag
ccgatcgcgttcgccacgattgaggacttcaccggccagggcgagatggtcatcttctcc
agcatcctcgaccgcgttcagccctacctggaggtcgacaacgtcgtcctcgcgaaaggc
aacgtggaggtccgcggcggcaccgtgaaggtgctcgcgaaggacctcaccccgatgtgg
aaggttcgcgagcagatggtgagcgaggtgatcctgacggtggacctcgaccaggtgatg
cccgacgagctccagaccttccggcagctctgcgagcggaccgaaggcaactgcacgctc
tacttcgacgtggatgcccctgagcttcggggccaggagcgcctccggagtcgcgcctac
gtcgtggagccgaccgccgagttcatgcggggggcccagcgcatcttcggtcccgacaac
atcgccctgaaggggaactga
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