Salinibacter ruber DSM 13855: SRU_2747
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Entry
SRU_2747 CDS
T00312
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
sru
Salinibacter ruber DSM 13855
Brite
KEGG Orthology (KO) [BR:
sru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sru03019
]
SRU_2747 (hrpB)
Enzymes [BR:
sru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SRU_2747 (hrpB)
Messenger RNA biogenesis [BR:
sru03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SRU_2747 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
HA2_N
ResIII
HA2_C
Motif
Other DBs
NCBI-ProteinID:
ABC44987
UniProt:
Q2RYZ2
LinkDB
All DBs
Position
complement(3398905..3401442)
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AA seq
845 aa
AA seq
DB search
MPDLPIDDVLPNLTAALRERTEAVLQAPTGAGKTTRVPLALLGEPWLGDDRLLMLEPRRL
AARSAAQYMARQLGEDAGETVGYRVRMDTRVSAQTRIEVVTEGVLTRMLQDDPALEGVGA
VLFDEFHERNLQADLGLALALQAREVFRPDLRVLVMSATLDTGPIAGLVDDAPLIQSEGR
SYPVEVHYADQPISPGDRLAPPVAAMVQEVLRDTEGDVLVFLPGAGEIRRTESRLEGDVP
GDVTLHPLFGNLPPGEQDAAIAPSPDGERKVVLATDIAETSLTIEGVRVVVDSGLRRAPR
FDATTGMTRLETVRVSQASADQRTGRAGRVAPGTCYRLWTKRTQHHLDPHTAPEIENADL
APLALELAKWGTPDPSALRWLDPPPDDTYEQAQALLQRLGAVDRDGTITDHGREMAELGL
HPRLAHMLLNAQALGHGAVACDLAALLSERDIFKGQGEAPDVDLRLRLEALHRLRRGERP
TPNHARSYVVPYGAVGHVRKVADHWRAKLGVDREAEGNVEVAGLLTAFAYPDRLAQRREG
QSGRFRLRTGRAATLPRPQLLSDADYLVAAHVDARRQENRIFLAAPLSEDEIVDYFGDQI
ETEMRVAWDAERERVRARRREQLGALTLTEGPVEAPDPTAVAEALVEGIREAGLGLLPWT
DHARQLQHRIQFLHHHLGDDWPDAHDEALLDTLEDWLLPHLYGLKRADDLQQLNLPQILR
DPLSYDQRDRLEEWAPTHVTVPSGFDRAIDYSDPEAPVLAVRLQELFGRTETPRIADGRV
PLTLHLLSPAQRPVQITQDLEGFWRGTYHEVRKDMRGRYPKHYWPEDPIDAPATHTTKAR
MDADA
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atgccggaccttccgatcgacgatgtgctgccgaacctgacggccgctctccgtgagcgg
acggaggcggtgcttcaagccccgacgggcgcgggcaagacgactcgcgtgccgctggcc
ctgctgggggagccgtggctcggggacgaccggctcctcatgctagagccgcggcggctg
gcggcccgctccgccgcgcagtacatggcccggcagctcggcgaggatgccggggagacg
gtggggtaccgggtgcgtatggacacacgggtaagcgcccagacccgcattgaggtcgtc
acggaaggggtgctcacgcgcatgctgcaggacgatccggcgctagagggcgtgggggcg
gtgctgttcgacgagttccacgagcgcaacctgcaggccgacctcgggctcgccctcgcg
ctccaggcccgcgaggtcttccggcccgacctgcgcgtgctcgtcatgagcgccacgctc
gacaccgggcccatcgcgggcctcgtcgacgatgcccccctgattcagagcgagggccgc
agctacccggtggaggtgcactacgccgaccaaccgatcagcccgggcgaccgcctcgcg
ccccctgtggcggcgatggttcaagaggtgctccgtgacaccgagggggacgtgctcgtc
tttctgcccggcgcgggcgagattcggcgcaccgagtcgcgtctggagggcgacgtgccc
ggcgacgtgaccctgcaccccctcttcggcaacctcccgccgggcgagcaggacgcggcc
atcgcgccgagcccggacggggagcgcaaggtcgtcctggccaccgacatcgccgagacg
agcctcaccatcgagggcgtccgggtggtcgtggacagcggcctccgccgcgcgccccgg
ttcgatgccacgaccggcatgacgcgcctggagacggttcgcgtctcgcaggcctccgcc
gaccagcgcacggggcgggccgggcgcgtggcccccggcacgtgctaccggctctggacg
aagcgcacgcagcaccacctcgacccgcacaccgcgccggagatcgagaacgccgacctc
gcgcccctcgccctggagctggcaaagtggggcacgcccgacccgtcggcgctccgctgg
ctcgacccgccgcccgacgacacctacgagcaggcacaggccctcctgcaacgcctcggg
gccgtcgaccgcgacggcacaattaccgaccacggccgcgagatggccgagctcgggctg
catccccgcctcgcccacatgctcctcaatgcgcaggcactgggccacggggccgtggcg
tgcgacctcgcggccctgctcagcgagcgcgacatcttcaaggggcagggcgaggcgccg
gacgtggacctccgattgcgactggaggcgctccaccgcctgcgccggggcgaacggccc
acccccaatcacgcccgcagctacgtggtcccctacggcgccgtcggccacgtccgcaag
gtggccgaccactggcgggcgaagctcggggtcgatcgggaggctgagggcaacgtggag
gtggcgggcctgctgaccgccttcgcctacccggaccgcctcgcgcaacggcgcgagggg
cagagcgggcgcttccggctccgcaccggccgtgccgccacgctgccgcggccccagctg
ctgtcggatgccgactacctcgtggcggcccacgtggacgcccgccggcaggagaaccgc
atcttcctggccgcgcccctctcggaagacgagatcgtcgactacttcggcgaccagatc
gagaccgaaatgagggtggcgtgggacgccgagcgggaacgggtgcgggcccggcgccgc
gagcagctcggcgccctcacgctcacggagggacccgtcgaggcgcccgacccgacggcg
gtggccgaggcgctggtggagggcatccgggaggcggggctgggcctgttgccgtggacc
gaccacgcccgtcagctccagcaccgcattcagtttctgcaccaccacctcggcgacgac
tggcccgacgcacacgacgaggcgctgctcgatacgctggaggactggctcctccctcac
ctgtacggcctgaagcgggccgacgacctccagcagctcaatctcccccaaatcctgcgc
gatccgctctcctacgaccagcgcgaccgcctggaggagtgggcccccacccacgtcacg
gtgcccagcgggtttgaccgggccatcgactactccgatcccgaggcgcccgtcctcgcg
gtgcgcctccaggaactgttcgggcgcaccgagaccccgcgcattgccgacgggcgcgtg
cccctaacccttcatctcctgtcgccggcccagcgcccggtccagatcacgcaggacctc
gaagggttctggcggggcacctaccacgaggtccggaaggacatgcgggggcgctacccg
aagcactactggcctgaggacccgatcgatgcccccgcgacccacactacgaaggcacga
atggacgcggacgcgtaa
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