Salinigranum rubrum: C2R22_00530
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Entry
C2R22_00530 CDS
T05289
Name
(GenBank) DEAD/DEAH box helicase
KO
K03725
putative ATP-dependent RNA helicase [EC:5.6.2.-]
Organism
srub
Salinigranum rubrum
Brite
KEGG Orthology (KO) [BR:
srub00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srub03019
]
C2R22_00530
Messenger RNA biogenesis [BR:
srub03019
]
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Others
C2R22_00530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AUV80330
UniProt:
A0A2I8VEH0
LinkDB
All DBs
Position
complement(102976..105027)
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AA seq
683 aa
AA seq
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MSQQVGQVDTLFLHERGENFLVVVQRDGKRVFRAVLELKETSAGPRPAKFRIKRGSSEEP
RDPQQFVELARRAARIRISQQTSKHARTRLKEMLDGYQLEALTVRTCRYCASNGRYSPIT
EETAIKADRDHVCPDCARRELERELSFSGGITGAAKDRLEELLLATQDLDKVTNLLQGGL
NPELTKFDEVSATVEDVDPVPTSSLDLHPTLQSRVEGRFDTLLPVQSLSVENGLFEGRDQ
LVVSATATGKTLVGELAGLDRVLKGRGKLLFLVPLVALANQKHEDFEERYGDIADVTIRV
GASRISDSNASFDPSADIIVGTYEGIDHALRTGKNLGDIGTVVIDEVHTLKEEERGHRLD
GMISRLKYYCERRARSKETYEGAQWVYLSATVGNPEWLARRLEATLIEFEERPVPIERHV
TFADGQEKARIIDKLVKREFDSESSKGYRGQTIVFTNSRRRCHELARKIGYDAAPYHAGL
DYGRRKRVERMFGDQDLAAVVTTAALAAGVDFPASQVVFDSLAMGIEWLSVQEFEQMLGR
AGRPDYHDRGRVYLLVEPDGAYHGSMEMTEDEVAFKLLKGEMEDVATVYDEAAAAEETLA
NVIVAGKRAKGLNDRMLGDIDTTRSVGRLLEWEFIDGFEPTPLGNAVCRHFLTPSEAFTL
LDCIRNGFGPYEVVAEMELRDQH
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
gtgtcacagcaggtcgggcaggtcgacacgctgttcctccacgaacggggcgagaacttc
ctcgtggtggtccagcgcgacggcaagcgggtgttccgggcggtcctcgagctgaaggaa
acctccgcggggccccgtccggcgaagttccgcatcaagcgcggttcctccgaggagccg
cgcgacccccagcagttcgtcgaactcgcccgccgcgccgcacggattcgaatctcacag
cagacctcgaagcacgctcggacccgactgaaggagatgctcgacggttaccagctagag
gcgctgacggtccggacctgccggtactgcgcctcgaacgggcgctactcgcccatcacc
gaagagacggccatcaaggccgaccgcgaccacgtctgccccgactgcgcccgccgcgaa
ctcgaacgcgaactgtccttttcgggaggtatcacgggcgcggcgaaggaccgcctcgaa
gaactgcttctcgcgacccaggacctcgacaaggtgacgaacctcttgcaaggagggctg
aaccccgaactcaccaagttcgacgaggtctccgccactgtcgaggacgtcgaccccgtt
cccacgtcctcgcttgacctccacccgacgctgcagtcgcgcgtggaggggcggttcgac
accctcctccccgtccagtcgctgtcggtcgagaacggcctcttcgaggggagggatcag
ctcgtggtgagcgcgacggcgaccgggaaaacgctcgtcggcgaactcgccggcctcgac
agggtgttgaaggggagaggcaaactcctctttctcgttcccctcgtcgcgttagcgaac
cagaagcacgaggacttcgaagagaggtacggcgacatcgccgacgtcaccatccgggtg
ggggcctcgcgcatctccgactcgaacgcgtcgttcgacccctccgcggacatcatcgtc
ggcacctacgagggcatcgaccacgcgctccgcacggggaagaacctcggcgacatcggc
accgtcgtcatcgacgaggtccacaccctcaaggaggaggaacgcggccaccgcctcgac
gggatgatatcccgactgaagtactactgcgagcgccgagccaggtcgaaagagacgtac
gagggggcgcagtgggtctacctctccgcgaccgtcgggaaccccgagtggctcgctcgc
agactcgaagcgacgctcatcgagttcgaggagcgtcccgtccccatcgagcggcacgtc
acgttcgccgacggacaggagaaggccaggatcatcgacaaactcgtcaagcgggagttc
gacagcgagtcgtcgaaggggtatcgaggacagaccatcgtcttcaccaactcgcgacgg
cgctgtcacgaactcgcgcggaagatcggatacgacgcggcgccgtaccacgccgggctg
gactacggccgtcgaaagcgcgtcgagcggatgttcggcgaccaggacctcgcggcggtc
gtcaccacggcggccctcgccgccggcgtcgacttccccgcctcgcaggtggtgttcgac
tcgctggcgatggggatcgagtggctctccgtccaggagttcgagcagatgctcggacgc
gcaggaaggccggactaccacgacagggggagagtgtacctcctcgtcgagcccgacggc
gcctaccacggctcgatggagatgaccgaggacgaagtcgcgttcaagctcctgaaaggc
gagatggaggacgtcgcgaccgtctacgacgaggccgccgccgccgaggagaccctcgcg
aacgtcatcgtcgccggcaagcgcgccaaggggctgaacgaccggatgctcggcgacatc
gacacgacgcggtcggtcggacgcttgctggagtgggagttcatcgacggcttcgagccc
accccgctggggaacgccgtctgtcggcactttctcaccccgtcggaggcgttcaccctg
cttgactgcatccggaacgggttcggtccctacgaagtcgtcgccgagatggagctgcgc
gaccaacactga
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