Salinigranum rubrum: C2R22_01660
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Entry
C2R22_01660 CDS
T05289
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
srub
Salinigranum rubrum
Pathway
srub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C2R22_01660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srub03019
]
C2R22_01660
03016 Transfer RNA biogenesis [BR:
srub03016
]
C2R22_01660
Enzymes [BR:
srub01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
C2R22_01660
Messenger RNA biogenesis [BR:
srub03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C2R22_01660
Transfer RNA biogenesis [BR:
srub03016
]
Prokaryotic type
tRNA degradation factors
C2R22_01660
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
AUV80523
UniProt:
A0A2I8VF15
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All DBs
Position
complement(343723..345051)
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AA seq
442 aa
AA seq
DB search
MSNDEQAYAGTAEGQGPVEIDAEVARHLKNKREELFEEFELRDQFPHAVLREAEERTEDV
QAEIQSEVDERKDLRDLTTWTTDPADAQDFDDAISIEKGDEEYTLWVHIADVSHYVHPGS
EMWAEAVKRGNTVYLPAYTVHMLPPILAETVCSLVPNEDRLAHTVEMHIDRETLSFESVD
IYKSVINSNERLTYTQCENRLDDENSPLHDENVLAFELADEMHEQRKEDGSLVLNPSRDR
AHTIIEECMLKANKAVTHELMWGRGVEAMYRVHPQPTPDQWDKALTEIMELDGVSIPGSS
FDDPRKAVNAALEEAPGRSLNKIQRAVLRVMPRAKYMNDPFGGHHALNFDIYGHFTSPIR
RLSDLINHWIVHENDVPEDLVELCDRASDRQKDAETAERLYKQFMDEIGLDPYAVNNRGV
VTVDEDGNVIDEDGMPPAEDER
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaacgacgagcaggcgtacgccgggaccgccgaaggacagggcccggtggagatc
gacgccgaggtcgcccgccacctcaagaacaagcgggaggagctcttcgaggagttcgag
ctccgggaccagttcccccacgccgtcctccgcgaggccgaggagcgaaccgaggacgtc
caagcggagatacagagcgaggtcgacgagcgaaaggacctccgcgacctgacgacgtgg
accacggaccccgcggacgcacaggacttcgacgacgccatctccatcgagaaaggcgac
gaggagtacacgctgtgggtccacatcgccgacgtctcccactacgtccacccgggctcg
gagatgtgggccgaggccgtgaaacgcgggaacacggtctaccttcccgcctacacggtc
cacatgctgccgcccatcctcgcggagacggtctgttctctggtcccgaacgaggatcgg
ttagcacatacggtcgagatgcacatcgaccgcgagacgctctcgttcgagtcggtcgac
atctacaagtcggtgatcaactcgaacgagcgactcacctacacgcagtgtgagaaccgc
ctcgacgacgagaattcgccgctgcacgacgagaacgttctggccttcgaactcgcggac
gagatgcacgaacagcgcaaggaggacggttcgctcgtcctgaaccccagtcgggaccgc
gcccacaccatcatcgaggagtgcatgctgaaggcgaacaaggccgtcacgcacgaactc
atgtggggccgcggcgtcgaggcgatgtaccgcgtccacccccagcccaccccggaccag
tgggacaaagccctcaccgaaatcatggaactcgacggcgtctccatcccggggtcgtcg
ttcgacgacccgcgcaaggcggtcaacgccgcgctcgaagaggcaccggggcggtcgctc
aacaagattcagcgcgccgtcctccgcgtgatgccccgggcgaagtacatgaacgacccg
ttcggcggccaccacgcgctgaacttcgacatctacggccacttcacctcacccatccga
cggctctccgatctgatcaaccactggatcgtccacgagaacgacgtgcccgaggacctc
gtcgaactgtgcgaccgcgcctcggacagacagaaggacgccgaaaccgcagaacgactc
tacaagcagttcatggacgagatcggactcgacccctacgcggtgaacaaccgcggggtc
gtcaccgtcgacgaggacggaaacgtcatcgacgaggacgggatgccgcccgcggaagac
gagcgatag
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