Streptomyces rutgersensis: F0345_08200
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Entry
F0345_08200 CDS
T08623
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
srug
Streptomyces rutgersensis
Pathway
srug03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srug00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F0345_08200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srug03019
]
F0345_08200
03009 Ribosome biogenesis [BR:
srug03009
]
F0345_08200
Enzymes [BR:
srug01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
F0345_08200
Messenger RNA biogenesis [BR:
srug03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
F0345_08200
Ribosome biogenesis [BR:
srug03009
]
Prokaryotic type
rRNA processing factors
F0345_08200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
QNE81101
UniProt:
A0A7G7C0I5
LinkDB
All DBs
Position
complement(1985470..1989681)
Genome browser
AA seq
1403 aa
AA seq
DB search
MLGSNDPAEGVDVDNDSPSDTLPPRRRRRAASRPAGPPAAAEAAAVAIPAPVPAEAEAPA
AEAPSGDEPAPRPRRRATRRASAPAGTPAAEAATTEAPPAQPQTAAAQAESAAQAEAGAQ
TEEAAPDRPRRRAARRASAPAGAPETPEAAGATGQEPDPEAASAEESAAPARRRRRATRP
AEAAASASAPVEERAAEEPAAVAEPDAQAEEAAPTRTRRRATRRVSAPVSSPAAAEAEGT
PEETTVAEDSTSEASTGDTAEESAPRRARRKPVRKGGLFSEPDQPKAAREERQEQEPGGR
GSRRRPAVAVFQAPVFSEPMFQTPERAAAEAASSAAADTSAPEPEAEEQAPRKRRRRRGE
DAPAQEAAPVREKPVERAPEPEPAEDDSEAEAEDETRTRDDDEHDNGDRPSRRRRRGGRR
RRRGESGDADHEQDEQQEQGAGTDARTGSQESAAEDEQDDHGDEHEGREERDESDHDNDA
DNGSGSSSSRRRRRRRRRAGDSGGEQEQSASGDDPERTVVKVREPRERKRDEPGTGPDEV
QSIKGSTRLEAKKQRRREGREQGRRRVPIITEAEFLARREAVERVMVVRQSGERTQIGVL
EDDVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVLYAGEVNFAALG
MAHGPRRIESALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKL
PDTERARLKGILKKIVPEDAGVIVRTAAEGASEEELRRDVERLHGQWQEIQKKANASNAS
SPSLLYGEPDMTVRVVRDIFNEDFSKVIVSGDEAWKTIHGYVGKVAPDLVDRLQRWTSET
DVFATYRIDEGLAKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGKFTGQGGNLEETVTRN
NLEAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSL
GLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHLDQPAVSGNGGGKRKKRGKGGQEDSTH
THDHGHDTEPESFEAETEAEVAAETAEPAALPSPEFVPDEELYSSAAEAEAAAGGGRRNR
RRATRRASAPAGAPRRPEESGREQAPVARQEQAAPVAEAPSAAPEPVVEAPAAEPAPAAE
AQAAEAPVTEAPAEEAPKRGRRRATRRASAPAGAPAASEPVSEPVAEAPVAEVAEAPQAT
PVAPEPEAEPQPEPAPATAAPARPRRRAVRKASAPTASEEAAVVVVAADRPEPSPEAAPE
QPAAAAEAAAETPVSEEAEAAPAKKTARKTAKKATTKKAAATKKTATAKKATAKKATAKS
TAKEATAEEAAPEPAPEAAPGTAPQEAAPEGTAAKKTTARKTAAKKAPAKKAAATKKTAT
AKKATTKKATAKKTAATAQPDED
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgctcggatcgaacgaccccgccgaaggcgtggacgtggacaacgacagccccagcgac
accctgccgccgcgcaggcgacggcgggccgcctcccggcccgccggaccgcccgcggcg
gcggaggccgcggccgtggccataccggctccggtaccggcggaggccgaggcgcccgcc
gccgaggcgccgtccggtgacgaaccggcgccgcgtccgcgccgccgcgccacccgccgg
gcctccgccccggccggtacgcccgccgccgaggcggcgaccaccgaggcccccccggcg
cagccgcagacggccgccgcgcaggccgagtccgccgcgcaggcggaggccggcgctcag
accgaggaggccgcaccggaccgcccgcgccgccgcgccgcccgccgcgcctccgccccg
gccggtgcgccggagacgcccgaggccgccggtgccaccggccaggaaccggaccccgag
gccgcctccgcggaggagagcgccgccccggcccgccggcgccgccgcgccacccggccc
gccgaggccgccgcgtccgcgtccgcgcccgtcgaggagcgggcggccgaggagcccgcc
gccgtggcggagcccgacgcgcaggccgaggaggccgcccccacccgtacgcgccgccgt
gccactcgtcgcgtttccgcacccgtctccagccccgcggctgccgaggccgaaggcacg
ccggaggagaccaccgtggccgaggacagcaccagcgaagcgagcaccggcgacaccgcc
gaggagagcgcgccgcgccgcgcccgccgcaagccggtccgcaagggcgggctgttcagc
gagcccgaccagccgaaggccgcccgcgaggagcgccaggagcaggagccgggcgggcgc
ggttcgcgtcgccgtccggccgtcgccgtcttccaggcaccggtcttctcggagcccatg
ttccagacgccggagcgcgccgccgccgaggccgcctcgtcggccgccgccgacacctcc
gcgcccgagccggaggccgaggagcaggcaccgcgcaagcgccgtcgccgccgtggggag
gacgctccggcgcaggaggccgcgccggtccgcgagaagccggtggagcgggcccccgag
cccgagcccgccgaggacgactccgaggccgaggccgaggacgagacccgcacgcgggac
gacgacgagcacgacaacggcgaccggccctcgcgccgacgccgccggggcggccgccgc
cgccgtcgcggtgagtccggcgacgccgaccacgagcaggacgagcagcaggagcagggc
gccggcaccgacgcgcgtaccggcagccaggagagtgccgccgaggacgagcaggacgac
cacggggacgagcacgagggccgcgaggagcgcgacgagtccgaccacgacaacgacgcc
gacaacggctcgggctccagcagcagccgccgtcgccgccgtcgccgccgccgcgccggg
gacagcgggggcgagcaggagcagagcgcctcgggcgacgacccggagcgcaccgtcgtc
aaggtccgcgagccgcgcgagcggaagagggacgagcccggcaccggtcccgacgaggtc
cagtcgatcaagggctcgacccgcctggaggcgaagaagcagcgccgccgggagggccgc
gagcagggccgccgccgggtgccgatcatcaccgaggcggagttcctggcgcgccgcgag
gccgtggagcgggtgatggtcgtccgccagagcggcgagcgcacccagatcggcgtgctc
gaggacgacgtgctcgtcgagcactacgtcaacaaggagcaggccacctcctacgtcggc
aacgtctacctcggcaaggtgcagaacgtcctgccgtcgatggaggccgccttcatcgac
atcggcaagggccgcaacgccgtgctgtacgccggtgaggtcaacttcgccgcgctgggc
atggcccacggcccgcgccgcatcgagtcggcgctcaagtccggccagtcggtcctggtg
caggtcaccaaggacccgatcggccacaagggcgcccgcctcaccagccaggtctcgctg
cccggccgctacctcgtctacgtccccgaggggtcgatgacgggcatcagccgcaagctg
cccgacaccgagcgggcccgcctcaagggcatcctcaagaagatcgtccccgaggacgcg
ggcgtcatcgtgcgcaccgccgccgagggcgcgagcgaggaggaactgcgccgcgacgtg
gagcggctgcacggccagtggcaggagatccagaagaaggcgaacgcgagcaacgccagc
tcgccgagcctgctctacggcgagcccgacatgacggtccgggtcgtccgcgacatcttc
aacgaggacttctccaaggtcatcgtcagcggtgacgaggcatggaagaccatccacggc
tacgtcggcaaggtcgcccccgacctggtcgaccggctccagcggtggacctcggagacc
gacgtcttcgcgacgtaccggatcgacgaggggctcgccaaggcgctggaccgcaaggtg
tggctgccgtcgggcggttcgctggtgatcgacaagaccgaggcgatgatcgtcgtcgac
gtcaacaccgggaagttcaccggccagggcggcaacctggaggagaccgtcaccaggaac
aacctggaggcggccgaggagatcgtgcgccagctgcggctgcgcgacctcggtgggatc
gtcgtcatcgacttcatcgacatggtcctggagtccaaccgcgacctggtcctgcgccgc
ctgctggagtgcctgggccgggaccggaccaagcatcaggtggccgaggtgacgtcgctg
ggcctggtccagatgacgcgtaagcgggtcggtcaggggctgctggagtcgttctcggag
acctgcgtccactgcaacggccggggtgtcatcgtccacctcgaccagccggccgtctcc
ggcaacggcggcggcaagcgcaagaagcgcggcaagggcgggcaggaggacagcacccac
acgcacgaccacggtcacgacacggagccggagagcttcgaggccgagacggaggccgag
gtcgccgccgagacggctgagcccgccgcgctgccgtcgccggagttcgtcccggacgag
gagctgtacagcagcgccgccgaggccgaggcggccgccggcgggggccgccgcaatcgt
cgccgggccacccgccgtgcctccgcgcccgccggtgccccgcgccggccggaggagtcg
ggccgcgagcaggccccggttgcccggcaggagcaggcggcgcccgtcgccgaggccccg
tccgccgcgccggagccggtcgtcgaggcgcctgccgccgagcccgcgcccgccgccgag
gctcaggccgccgaggccccggtcaccgaggccccggccgaggaggcgccgaagaggggc
cgtcgccgggccacccgccgtgcctccgcgcccgccggtgcgccggccgcgtcggagccg
gtgagcgagccggtcgccgaggcgccggtcgccgaggtcgcggaggccccgcaggccacg
ccggtggctccggagcccgaggccgagccgcagccggagcccgctccggccaccgcggcc
ccggcccggccgcgccggcgcgccgtccgcaaggcctcggcgccgaccgcgtcggaggag
gcggccgtggtggtcgtcgccgccgaccgtccggagccctcgcccgaggcggcgccggag
cagcccgcggctgccgccgaggctgcggccgagacccccgtgagcgaggaggccgaggcg
gcgcccgccaagaagacggcgcgcaagacggcgaagaaggccaccaccaagaaggccgcc
gccaccaagaagacggcgacggcgaagaaggcgacggccaagaaggcgacggccaagtcg
acggccaaggaggcgacggccgaggaggcggcccccgagccggctccggaggcggccccc
gggacggcgccccaggaggcggcccccgaggggaccgcggccaagaagacgacggccagg
aagacggcggccaagaaggccccggcgaagaaggccgccgccaccaagaagacggcgacg
gcgaagaaggccacgaccaagaaggcgacggccaagaagacggccgccaccgctcagccc
gacgaggactga
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