Streptomyces rutgersensis: F0345_11595
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Entry
F0345_11595 CDS
T08623
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
srug
Streptomyces rutgersensis
Brite
KEGG Orthology (KO) [BR:
srug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
srug03016
]
F0345_11595
Enzymes [BR:
srug01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
F0345_11595
Transfer RNA biogenesis [BR:
srug03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
F0345_11595
Prokaryotic type
tRNA splicing ligases
F0345_11595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QNE81684
UniProt:
A0ABX6RPR1
LinkDB
All DBs
Position
complement(2764595..2765788)
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AA seq
397 aa
AA seq
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MAYQEIPGARVPIRMWADPAGVEEAAMRQLQNVATLPWIKGLAVMPDVHYGKGATVGSVI
AMRDAVCPAAVGVDIGCGMSAVRTSLTADDLPGDLSRLRSKIEEAIPVGRGMHERPVDPT
RTHGFGTHRWDAFWDRFDTVAASVHFRRERAAHQMGTLGSGNHFVEVCTDTEGAVWLMLH
SGSRNIGKELADHHIGVARDLPHNQGLVDRDLAVFVAGTPQMAAYRNDLFWAQEYARYNR
TLMMDLLKRVVSREFKKARVAYEPEISCHHNYVSEERYDGMDLLVTRKGAIRAGSGDYGI
IPGSMGTGSYIVKGLGNDASFNSASHGAGRRMSRNAAKRRFSVRDLAEQTHGVECRKDSG
VVDEIPGAYKLIEQVIDQQRDLVAVVAQLKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atggcttaccaggagattccgggcgcgcgggtgcccatccgcatgtgggccgacccggcg
ggggtcgaggaggcggcgatgcgccagctccagaacgtcgccacgctgccgtggatcaag
ggcctcgccgtcatgcccgacgtgcactacggcaagggcgccaccgtcggctccgtcatc
gccatgcgcgacgcggtctgcccggccgccgtcggcgtcgacatcggctgcggcatgtcg
gcggtgcgtacctcgctcaccgccgacgacctgcccggcgacctctcccggctgcgctcc
aagatcgaggaggccatcccggtcgggcgcgggatgcacgagcggccggtcgacccgaca
cgtacgcacggcttcggcacccaccgctgggacgccttctgggaccgcttcgacaccgtc
gccgcgtccgtccacttccggcgggagcgggccgcccaccagatgggcacgctcggctcc
ggcaaccacttcgtcgaggtctgcaccgacaccgagggcgccgtctggctgatgctgcac
tccggttcgcgcaacatcggcaaggaactggccgaccaccacatcggcgtcgcccgcgac
ctgccgcacaaccagggcctcgtcgaccgcgacctcgccgtcttcgtcgcgggcaccccg
cagatggcggcgtaccggaacgacctgttctgggcgcaggagtacgccaggtacaaccgg
acgctgatgatggacctgctcaagcgggtggtctcccgcgagttcaagaaggcgcgggtc
gcctacgagccggagatctcctgccaccacaactacgtgagcgaggagcggtacgacggg
atggacctgctcgtcacccgcaagggggcgatccgcgcgggcagcggggactacgggatc
atccccgggtccatgggcaccggctcgtacatcgtgaaggggctcgggaacgacgcctcc
ttcaactccgcctcgcacggcgccgggcggcggatgagccggaacgcggcgaagcggagg
ttctccgtgcgcgatctggccgagcagacgcacggggtcgagtgccggaaggactccggg
gtcgtggacgagatccccggggcctacaagctcatcgagcaggtcatcgaccagcagcgg
gatctggtcgccgtcgtggctcagctcaagcaggtggtctgcgtcaaggggtga
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