Streptomyces rutgersensis: F0345_12675
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Entry
F0345_12675 CDS
T08623
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
srug
Streptomyces rutgersensis
Brite
KEGG Orthology (KO) [BR:
srug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
srug03032
]
F0345_12675 (topA)
03400 DNA repair and recombination proteins [BR:
srug03400
]
F0345_12675 (topA)
Enzymes [BR:
srug01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
F0345_12675 (topA)
DNA replication proteins [BR:
srug03032
]
Prokaryotic type
DNA Topoisomerases
F0345_12675 (topA)
DNA repair and recombination proteins [BR:
srug03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
F0345_12675 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HC2
Toprim_2
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QNE81869
LinkDB
All DBs
Position
complement(3055918..3058812)
Genome browser
AA seq
964 aa
AA seq
DB search
MSPTSETAEGGRRLVIVESPAKAKTIKGYLGPGYTVEASVGHIRDLPNGAAEVPEKYTGE
VRRLGVDVEHDFQPVYVVNADKKAQVRKLKELMAESDELFLATDEDREGEAIAWHLQEVL
KPKIPVHRMVFHEITKDAIRAAVANPRELNKKLVDAQETRRILDRLYGYEVSPVLWKKVM
PRLSAGRVQSVATRLVVERERERIAFRTAEYWDLTGTFGTGRGGDSSDPAQLVARLNAVD
GKRVAQGRDFNSVGQLKSDTLHLDEAGARALADALADTAFAVRSVESKPYRRSPYAPFRT
TTLQQEASRKLGFGAKATMQIAQKLYENGFITYMRTDSTTLSDTAVGAARAQVTQLYGAD
YLPDKPRTYAGKVKNAQEAHEAIRPSGDRFRTPAETGLTGDQFRLYELIWKRTVASQMKD
AVGNSVTVRIGGRSADGRDAEFSASGKTITFHGFLKAYVEGADDPNAELDDRERRLPQVS
EGDPLAADAMSVDGHSTKPPARYTEASLVKELEEREIGRPSTYASILGTILDRGYVFKKG
TALVPSFLSFAVVNLLEKHFGRLVDYDFTARMEDDLDRIARGEAQAVPWLRRFYFGEGDA
AAGSASAAGNGDGDHLGGLKELVTDLGAIDAREISSFPVSDDIKLRVGRYGPYIERGEKD
SENHQRADIPEDLAPDELTVELAEELLAKPSGDFELGTDPETGRQIVAKDGRYGPYVTEV
LPEGTPKTGKNAVKPRTASLFKSMSLDTVTLADALKLMSLPRVVGTDPEGVEITAQNGRY
GPYLKKGTDSRSLESEEQLFTITVDEALAIYAQPKQRGRAAAKPPLKELGEDPVSGRPVV
VKDGRFGAYVTDGETNATLRVADSVEEITPERGYELLAEKRARGPVKKKTAKKAPAKKAT
AKKAPAKKAPAKTAAAKKTAGTAKTAAKKTTAKKATGAGSTAASKSAAAKKSAGSTDGAD
SGEE
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
ttgtccccgaccagcgagaccgcagagggcggccgccgcctcgtcatcgtcgagtcgccc
gccaaggcgaagacgatcaagggctacctcggccccggctacaccgtcgaggcgagcgtc
ggacacatccgtgaccttccgaacggcgccgccgaggtgccggagaagtacacgggcgag
gtccgccggctcggcgtcgacgtcgagcacgacttccagcccgtctacgtggtcaacgcg
gacaagaaggcgcaggtcaggaagctcaaggagctgatggccgagtcggacgaactcttc
ctcgccaccgatgaggaccgcgagggcgaggccatcgcctggcatctccaggaggtgctg
aagccgaagatccccgtccaccggatggtcttccacgagatcaccaaggacgcgatccgc
gccgccgtcgccaacccccgcgagctgaacaagaagctggtggacgcccaggagacccgc
cgcatcctcgaccgcctctacggctacgaggtctcgccggtcctgtggaagaaggtcatg
ccgcgcctgtcggcgggccgcgtccagtcggtggccacccgcctcgtcgtcgagcgggag
cgcgagcgcatcgccttccgcaccgccgagtactgggacctgaccggcaccttcggcacc
ggccggggcggtgacagcagcgatcccgcacagctcgtcgcccgcctcaacgccgtcgac
ggcaagcgggtcgcgcagggccgcgacttcaactccgtcggacagctcaagtccgacacg
ctccacctcgacgaggcgggcgcccgcgcgctggccgacgccctcgccgacaccgccttc
gccgtccgctcggtcgagtcgaagccgtaccgccgctcgccgtacgcgccgttccgcacg
acgacgctccagcaggaggcgagccgcaagctcggcttcggcgccaaggcgaccatgcag
atcgcccagaagctgtacgagaacggcttcatcacctacatgcgtaccgactccacgacg
ctctccgacacggcggtcggcgcggcccgtgcgcaggtcacgcagttgtacggggccgac
tacctgcccgacaagccgcgtacgtacgccggcaaggtgaagaacgcgcaggaggcgcac
gaggcgatccgcccctccggcgaccgcttccgcacgcccgccgaaacgggcctgaccggt
gaccagttccgcctctacgagctgatctggaagcggaccgtcgcctcccagatgaaggac
gccgtcggcaactccgtcacggtcaggatcggcggccgctccgccgacggccgcgacgcc
gagttctccgcctccggcaagaccatcaccttccacgggttcctcaaggcgtacgtcgag
ggtgccgacgaccccaacgccgagctggacgaccgtgagcgccggctcccgcaggtcagc
gagggcgacccgctggccgccgacgcgatgagcgtcgacggccactccaccaagccgccc
gcccgctacaccgaggcgtcgctggtcaaggagttggaggagcgcgagatcggccgcccg
tcgacgtacgcgtcgatcctcgggacgatcctcgaccgcgggtacgtcttcaagaagggg
acggcgctcgtgccgtccttcctctccttcgccgtggtcaacctgctggagaagcacttc
ggccggctcgtcgactacgacttcaccgcccgcatggaggacgacctcgaccgcatcgcg
cgcggcgaggcccaggccgtgccgtggctgcgccgcttctacttcggcgagggcgacgcc
gcggccggctccgcctccgcggcgggcaacggcgacggcgaccacctcggcggcctcaag
gaactcgtcaccgacctcggcgccatcgacgcgcgggagatctcgtccttcccggtcagc
gacgacatcaagctgcgcgtcggccggtacgggccgtacatcgagcgcggtgagaaggac
tcggagaaccaccagcgcgccgacatccccgaggacctcgcgcccgacgagctgaccgtc
gagctggccgaggaactgctggccaagcccagcggcgacttcgagctgggcaccgacccc
gagacgggccgccagatcgtcgccaaggacgggcggtacgggccgtacgtcaccgaggtg
ctgcccgagggcacgccgaagaccggcaagaacgcggtcaagccgcgtacggcctcgctc
ttcaagtcgatgagcctggacacggtgacgctcgcggacgcgctgaagctgatgtcgctg
ccgcgtgtcgtcggtaccgaccccgagggcgtcgagatcaccgcgcagaacggacgctac
ggcccgtacctgaagaaggggacggactcgcggtcgctggagagcgaggagcagctcttc
accatcacggtggacgaggccctcgcgatctacgcgcagcccaagcagcgcggtcgcgcc
gccgccaagccgccgctgaaggaactgggcgaggacccggtcagcgggcgtcccgtcgtc
gtgaaggacggccgcttcggcgcctacgtcaccgacggcgagaccaacgcgacgctgcgg
gtggccgacagcgtggaggagatcacccccgagcgcggctacgagctgctcgcggagaag
cgggcgcgcggcccggtcaagaagaagaccgcgaagaaggccccggccaagaaggccacc
gccaagaaggccccggccaagaaggcgccggccaagaccgccgccgcgaagaagaccgcg
gggacggccaagacggcggccaagaagaccaccgcgaagaaggcgacgggggccggcagc
accgccgcctccaagtcggccgcggcgaagaagagcgccgggagcacggacggggcggac
tccggcgaggagtga
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