Streptomyces rutgersensis: F0345_15005
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Entry
F0345_15005 CDS
T08623
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
srug
Streptomyces rutgersensis
Brite
KEGG Orthology (KO) [BR:
srug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srug03019
]
F0345_15005 (hrpA)
Enzymes [BR:
srug01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
F0345_15005 (hrpA)
Messenger RNA biogenesis [BR:
srug03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
F0345_15005 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
HA2_C
DEAD
WHD_HA2
AAA_19
AAA_22
nSTAND3
nSTAND_NTPase5
SLFN-g3_helicase
AAA_25
NACHT
ResIII
T2SSE
NTPase_1
PhoH
AAA_30
TsaE
MetJ
AAA_16
DUF6139
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
QNE82262
UniProt:
A0ABX6RNX2
LinkDB
All DBs
Position
complement(3625955..3629986)
Genome browser
AA seq
1343 aa
AA seq
DB search
MSTISDLHPLLAELSLRDAHRLGRRLEGTRRIRKPESRAAVLEEIRAEAEKGAARMAERR
ARVPEITYPEQLPVSQKKDLIAEAIRENQVVVVAGETGSGKTTQIPKICLELGRGVRGMI
GHTQPRRIAARTVAERIADELDTPLGEAVGWKVRFTDQVRQDATFIKLMTDGILLAEIQT
DRELRAYDTIIIDEAHERSLNIDFLLGYLAQLLPRRPDLKVVITSATIETDRFARHFGPR
MATVGGEPAGDDAAAPVIEVSGRTYPVEVRYRPLLEEGGEDADRDQVTAICEAVDELQAE
GPGDVLVFLSGEREIRDTADALAKRNLRGTEILPLYARLSHQEQHRVFQRPGPGVRSRVV
LATNVAETSLTVPGIKYVIDPGTARVSRYSHRTKVQRLPIEPVSQASANQRKGRCGRTSD
GICVRLYSEEDFLARPEFTDAEILRTNLASVILQMTAAGLGDIERFPFIDPPDHRNIRDG
VQLLQELGALDPAEKDPRKRLTERGRRLAQLPVDPRLARMVLEADRNGCVREVMVIAAAL
SIQDPRERPSEKQAQADQQHARFKDETSDFLSYLNLWRYLRAQQKERSSSAFRRMCKAEY
LNYLRIREWQDIYTQLRTVARQMGLELSEDDAADQPIHISLLAGLLSHIGMKDVKETAPA
ASAAKQGRDGARGGRNEYLGARGAKFAVFPGSALFRKPPRFLMSAELVETSRLWARVNAR
IEPEWVEPLAEHLVKRTYSEPHWEKDQAAVVAYEKVTLYGVPIVAHRKVHYGRIDPEVSR
DLFIRNALVEGDWRTHHQFFAANRKLLTEVEELEHRARRRDIVVDDETLFDFYDQRVPAD
VVSGAHFDSWWKRKQKEEPELLDFERSMLLTEAARAVTKADYPDSWRQGGLKFRVTYQFE
PGADADGVTVHIPLQVLNQVTDEGFDWQIPGLREEVVTELIRSLPKPIRRHYVPAPNYAQ
AFLERAAPLQEPLTVTLARELQRIVGVPVTGDDFDTSRVPDHLKITFRIVDERRRALAED
KDLEALQLKLRPKARQALSKAAAATAERSGGPSIERSGLTDWTIGALPEVFETRRAGQPV
KAYPALVDEGSSVAVRLFDSEAEQRQAMRRGTRRLILLNIPVNPAKFAADRLTNQQKLNL
SANPHGSVQALFEDCATAAADRLIADHGGPAWDEEAYRKLYEKVRADLVDTTLRAIQQVQ
QVLAAWGAVERRLKSTRSPALLANLADVREQVSALVRPGFVTEAGLGRLPDLKRYLVAAD
RRLAQMPTGVQRDTTRMAKIKEMQDEYAWLLEQLPRGRPVPKEVLEIRWMIEELRVSYFA
HALGTAYPVSDKRIVKAVDAAAP
NT seq
4032 nt
NT seq
+upstream
nt +downstream
nt
atgtctacgatctccgacctccaccccctgctggccgagctgtccctgcgcgacgcgcac
cggctcgggcgccgcctggagggcacacgccgtatacgcaagccggagtccagggctgcc
gtcctggaggagatcagggcggaggcggagaagggcgcggccaggatggccgagcgccgg
gcccgcgtgccggagatcacctaccccgagcagctgcccgtcagccagaagaaggacctg
atcgccgaggcgatccgggagaaccaggtggtcgtcgtcgccggtgagaccggctccggc
aagaccacgcagatccccaagatctgcctggagctgggccggggtgtgcgcggcatgatc
ggccacacccagccgcgccggatcgcggcgcgcacggtggccgagcggatcgccgacgag
ctggacacgccgctcggcgaggcggtcggctggaaggtgcgtttcaccgaccaggtccgc
caggacgccaccttcatcaagctgatgaccgacggcatcctcctcgcggagatccagacc
gaccgcgagctgcgcgcctacgacacgatcatcatcgacgaggcccacgagcggagcctc
aacatcgacttcctcctcggctacctggcgcagctgctgccacgccgacccgacctgaag
gtcgtcatcacctccgcgacgatcgagaccgaccggttcgcgcgccatttcgggccgcgg
atggcgaccgtcggcggcgagccggccggtgacgacgcggccgcgccggtcatcgaggtc
agcggtcggacgtacccggtggaggtgcggtaccggccgctgctggaggagggcggcgag
gacgccgaccgggaccaggtcaccgcgatctgcgaggcggtagacgaactccaggccgag
ggccccggcgacgtgctggtcttcctctccggtgagcgggagatccgcgacaccgccgac
gcgctggccaagcggaacctgcgcggcaccgagatcctgccgctctacgcccgcctctcg
caccaggagcagcaccgcgtcttccagcgccccgggccgggcgtccgcagccgcgtggtg
ctggcgaccaacgtggccgagacctcattgacggttcccggcatcaagtacgtcatcgac
ccgggcaccgcccgcgtctcgcggtacagccaccgcaccaaggtgcagcggctgccgatc
gagccggtctcgcaggccagcgccaaccagcgcaagggccgctgcgggcgtacctcggac
ggcatctgcgtccggctctactccgaggaggacttcctcgcgcggccggagttcaccgac
gcggagatcctgcggaccaacctcgcctcggtcatcctccagatgaccgcggccgggctc
ggcgacatcgagaggttcccgttcatcgaccccccggaccaccgcaacatccgcgacggc
gtgcagctgctccaggagctcggcgcgctggacccggccgagaaggacccgcgcaagcgg
ctgaccgagcgcggccgacggctggcgcagctaccggtcgacccgcggctggcccggatg
gtgctggaggccgaccggaacggctgcgtccgcgaggtcatggtgatcgcggcggccctg
tcgatccaggacccgcgcgagcggccctccgagaagcaggcgcaggccgaccagcagcac
gcccgtttcaaggacgagaccagcgacttcctcagctacctcaacctctggcggtacctg
cgggcgcagcagaaggagcggtcgtcctcggcgttccgccggatgtgcaaggcggagtac
ctcaactacctgcgcattcgcgagtggcaggacatctacacgcagctgcgcaccgtcgcc
aggcagatggggctggagctcagcgaggacgacgcggccgaccagccgatccacatctca
ctgctggcggggctgctgtcgcacatcggcatgaaggacgtgaaggagaccgcccccgcc
gcctccgccgccaagcaggggcgcgacggcgcgcgcggtggccggaacgagtacctgggg
gcccgtggcgcgaagttcgcggtgttccccggttcggcgctgttcaggaagccgccgcgg
ttcctgatgtcggccgagctggtggagacctcccggctgtgggcgcgggtcaacgcgagg
atcgaaccggagtgggtcgagccgctcgccgagcacctggtgaagcggacgtacagcgaa
ccgcactgggagaaggatcaggccgccgtggtcgcctacgagaaggtgacgctgtacggc
gtgccgatcgtggcgcaccggaaggtccactacggccggatcgacccggaggtctcccgg
gaccttttcattcgcaacgcgctggtcgagggtgactggcgcacccaccaccagttcttc
gccgccaaccggaagctgctcacggaggtcgaggagctggagcaccgggcccggcgccgc
gacatcgtggtcgacgacgagaccctcttcgacttctacgaccagcgggtgccggccgac
gtcgtctccggcgcgcacttcgactcctggtggaagcggaagcagaaggaggagcccgaa
ctcctcgatttcgagcgctcgatgctgctgacggaggcggcgcgggcggtcaccaaggcc
gactacccggattcctggcggcagggcggtctgaagttccgggtgacgtaccagttcgag
ccgggcgcggacgcggacggtgtcaccgtgcacatcccgctccaggtgctcaaccaggtc
accgacgaggggttcgactggcagatcccgggcctgcgcgaggaggtcgtcaccgagctg
atccgctcgctgcccaagccgatccgccgccactacgtgcccgcgcccaactacgcgcag
gcgttcctggagcgcgccgccccgctccaggagccgttgacggtgacgctcgcccgggag
ctccagcggatcgtcggcgtcccggtgaccggcgacgacttcgacacctcgcgggtcccc
gaccatctgaagatcaccttccggatcgtcgacgagcgacgccgcgcgctcgccgaggac
aaggacctggaggcgctccagctcaagttgcgccccaaggcccgccaggccctctccaag
gcggcggccgccaccgccgagcgttccggcggtccctccatcgagcggagcggcctcacc
gactggacgatcggcgccctgcccgaggtcttcgagacccgccgggccggccagccggtc
aaggcgtatccggccctggtggacgagggttcctcggtcgccgtccgcctcttcgactcc
gaggccgagcagcggcaggcgatgcggcgcggcacccggcgcctgatcctgctcaacatc
ccggtcaacccggccaagttcgccgccgaccggctcaccaaccagcagaagctcaacctc
tcggccaacccgcacggctccgtccaggccctcttcgaggactgcgccaccgccgccgcc
gaccgcctcatcgccgaccacggcggccccgcctgggacgaggaggcgtaccggaagctg
tacgagaaggtgcgcgcggatctggtcgacacgacgctgcgggccatccagcaggtccag
caggtgctggcggcctggggggcggtggagcggcggttgaagtcgacccgttcgccggcg
ctgctggccaacctggccgacgtgcgcgagcaggtctcggcgctggtccggcccggcttc
gtcacggaggcggggctcgggcgcctccccgacctcaagcgctacctggtcgccgccgac
cggcgactcgctcagatgccgaccggcgtgcagcgggacacgacccggatggccaagatc
aaggagatgcaggacgagtacgcgtggctgctggagcagctgccgcggggcagacccgtg
ccgaaggaggtcctggagatccgctggatgatcgaggaactccgggtcagctacttcgcg
cacgccctcggtacggcgtacccggtctccgacaaacgcatcgtgaaggcggtggacgcg
gcggctccgtga
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