Streptococcus ruminicola: GPZ88_03160
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Entry
GPZ88_03160 CDS
T08901
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
srum
Streptococcus ruminicola
Pathway
srum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GPZ88_03160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srum03019
]
GPZ88_03160
Messenger RNA biogenesis [BR:
srum03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GPZ88_03160
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
SIS_2
Motif
Other DBs
NCBI-ProteinID:
QIM46135
UniProt:
A0A6G8HZ48
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Position
613043..614725
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AA seq
560 aa
AA seq
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MSQINLKPEEVGVYAIGGLGEIGKNTYGIEYQDEIIIVDAGIKFPEDDLLGIDYVIPDYS
YIVDNIDRIKGLVITHGHEDHIGGIPFLLKQANIPIYAGPLALSLIKGKLEEHGLLRDAK
LYEINANTELTFKNLSVTFFRTTHSIPEPLGIVIHTPQGKIVCTGDFKFDWTPVGEPADI
HRMAALGEDGVLCLLSDSTNAEIPTFTNSEKVVGQSIMKIIEGIHGRIIFASFASNIFRL
QQAAEAAVKTGRKIVVFGRSMEKAIVNGIELGYIKVPKGTFIEPSEIKDYHASEILIMCT
GSQGESMAALARIANGTHRQVTLQPGDTVIFSSSPIPGNTTSVNKLINTIQEAGVEVIHG
KVNNIHTSGHGGQQEQKLMLRLMKPKFFMPVHGEYRMLKIHAGLAMDTGVPKDNIFIMEN
GDVLALTANSARRAGHFNAQDIYVDGNGIGDIGAAVLRDRRDLSEDGVVLAVATVDFDSQ
MILAGPDILSRGFIYMRESGDLIRESQRVLFNAIRIALKNKDASIQSVNGAIVNALRPFL
YEKTEREPIIIPMILTPDDK
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaaatcaatttaaaacccgaagaagttggggtttatgcgattggtggtctcgga
gaaattggtaaaaacacttacggtattgaatatcaagatgaaatcattatcgtagatgct
ggtatcaaattcccagaagacgatttgctcggtattgactacgtcattccagactattca
tatatcgttgacaatatcgatcgcattaaaggccttgtgattactcacgggcacgaagac
cacattggtgggattccatttcttttgaaacaagccaatattccaatttatgctggacca
cttgcgctttcacttatcaaaggaaaattggaagaacacggacttttacgtgacgctaaa
ctttatgaaatcaacgccaatacagagttgacttttaaaaaccttagcgttacattcttc
cgtacaacccactcaattccggaacctctaggaatcgttatccacacaccacaaggtaaa
attgtctgcacaggggatttcaaatttgactggacaccagttggtgaaccagcagatatc
caccgcatggctgcacttggtgaggatggcgtcctatgtttgctatctgattctactaac
gcagaaattccaacctttacaaactcagaaaaagttgttggacaatctattatgaagatt
attgaaggtatccacggacgtattatctttgcgtcatttgcctcaaacatcttccgtctc
caacaagctgccgaagcagctgttaaaactggacgtaaaatcgtagtcttcggacgttca
atggaaaaagccattgtaaacggtattgaacttggttacatcaaagttccaaaaggaaca
tttatcgaaccaagcgaaatcaaagactaccacgctagtgaaatcttgattatgtgtaca
ggtagccaaggtgaatcaatggctgcgctagcacgtattgctaatggtacacaccgtcaa
gttacactacaacctggcgatactgtcatcttctcttctagcccaattcctggtaataca
acaagtgttaacaaacttatcaacactatccaagaggctggtgtagaagttatccacgga
aaagttaacaatatccacacatctggtcacggtggacaacaagagcaaaaacttatgctc
cgcttgatgaaaccaaaattcttcatgccagttcacggtgaataccgtatgcttaaaatc
cacgctggtttagcgatggacacaggtgtgccaaaagacaatatcttcatcatggaaaac
ggtgatgtgctagctcttacagctaactcagctcgtcgtgctggacactttaacgcccaa
gacatctatgttgatggtaatggtatcggagatatcggtgctgccgtacttcgtgaccgc
cgtgatttgtctgaagacggtgttgttcttgccgttgctactgttgactttgatagccaa
atgattttggcaggtccagacattcttagtcgtggatttatctacatgcgtgaatctggt
gaccttattcgtgaaagtcaacgtgttctcttcaatgctatccgtattgctttgaagaac
aaagacgcaagtatccaatctgtaaatggtgctatcgttaacgcacttcgtccattccta
tacgaaaaaactgaacgtgaaccaatcattattccaatgattctcacaccagatgataaa
taa
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