Streptococcus ruminicola: GPZ88_05010
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Entry
GPZ88_05010 CDS
T08901
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
srum
Streptococcus ruminicola
Pathway
srum03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
srum00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GPZ88_05010 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
srum03021
]
GPZ88_05010 (rpoC)
03400 DNA repair and recombination proteins [BR:
srum03400
]
GPZ88_05010 (rpoC)
Enzymes [BR:
srum01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GPZ88_05010 (rpoC)
Transcription machinery [BR:
srum03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GPZ88_05010 (rpoC)
DNA repair and recombination proteins [BR:
srum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GPZ88_05010 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QIM46431
UniProt:
A0A6G8I088
LinkDB
All DBs
Position
966558..970196
Genome browser
AA seq
1212 aa
AA seq
DB search
MVDVNRFKSMQITLASPSKVRSWSYGEVKKPETINYRTLKPEREGLFDEVIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRAKVRRERMGHIELKAPVSHIWYFKGIPSRMGLTLDM
SPRALEEVIYFAAYVVIDPKDTPLEPKSLLTEREYREKIQEYGQGSFVAKMGAEAIQDLL
KRVDLKSEIAELKEELKTATGQKRIKAVRRLDVLDAFYKSGNKPEWMVLNILPVIPPDLR
PMVQLDGGRFAASDLNDLYRRVINRNNRLARLLELNAPGIIVQNEKRMLQEAVDALIDNG
RRGRPITGPGSRPLKSLSHMLKGKQGRFRQNLLGKRVDFSGRSVIAVGPTLKMYQCGVPR
EMAIELFKPFVMREIVARDYAGNVKAAKRMVERGDERIWDILEDVIKEHPVLLNRAPTLH
RLGIQAFEPVLIDGKALRLHPLVCEAYNADFDGDQMAIHVPLSEEAQAEARLLMLAAEHI
LNPKDGKPVVTPSQDMVLGNYYLTMEEPGREGEGMVFKDRDEAVMAYRNGYVHLHTRVGI
TVDSMPNKPWTDEQKHKIMVTTVGKILFNDIMPDDLPYLQEPNNANLTEKTPDKYFLAPG
QDIHTVIDSLDINVPFKKKNLGNIIAEIFKRFRTTETSAFLDRLKDLGYYHSTLAGLTVG
IADIPVIDNKQEIIDAAHSKVEQINKAFRRGLMTDDDRYVAVTTTWREAKEELEQRLIET
QDPKNPIVMMMDSGARGNISNFSQLAGMRGLMAAPNGRIMELPILSNFREGLSVLEMFFS
THGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGLVISAITDGKEVTETL
EERLVGRYTKKSVKHPETGEVIVGADVLITEDMAAEIVKAGVEEVTIRSVFTCNTRHGVC
RHCYGVNLATGDAVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVASNTDITQGLPRIQE
IFEARNPKGEAVITEVKGTVVDIEEDASTRTKKVYVQGKTGMGEYVVPFTARMKVAVGDE
VHRGAPLTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGDKHVEVMVRQMLRK
VRIMDPGDTDLLPGTLMDIADFTDANKDVVISGGIPATARPVLMGITKASLETNSFLSAA
SFQETTRVLTDAAIRGKKDHLLGLKENVIIGKIIPAGTGMARYRNLEPQAVNELETSEEA
ETVEASASTDAE
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
gtggttgacgtaaatcgttttaaaagtatgcaaatcacattagcctcaccaagtaaggtc
cgttcatggtcttatggtgaagttaaaaaacctgaaacaatcaactatcgtacgctcaaa
ccagaacgtgaaggtctttttgatgaagttatcttcggacctacaaaagactgggaatgt
gcttgtggtaaatataaacgtattcgttataaaggaattgtttgtgaccgctgtggtgtt
gaagtaacacgtgctaaagttcgtcgtgaacgtatgggtcacatcgaattgaaagctcca
gtatcacacatttggtacttcaaaggtattccatcacgtatgggacttactttggacatg
agcccacgtgcacttgaagaagttatctacttcgctgcttacgtggttatcgatccaaaa
gatactccgcttgaaccaaaatcacttttgacagaacgcgaataccgtgaaaaaatccaa
gaatatggacaaggttcattcgtagcgaaaatgggtgcggaagctatccaagatcttctt
aaacgcgttgatttgaaatctgaaatcgctgaacttaaagaagaattgaaaacagcaact
ggtcaaaaacgtatcaaagctgttcgtcgtttggatgttcttgatgccttctacaaatct
ggtaacaaaccagaatggatggtacttaacatcttgccagttattccaccagatcttcgt
ccaatggttcaattggatggtggacgtttcgctgcatctgacttgaacgacctttaccgt
cgtgttatcaaccgtaacaaccgtttggctcgtttgcttgaattgaatgcccctggtatt
atcgtgcaaaacgaaaaacgtatgttgcaagaagctgttgatgctcttatcgataacggt
cgtcgtggtcgtccaatcacaggtcctggtagccgtcctcttaaatctttgagccacatg
cttaaaggtaaacaaggtcgtttccgtcaaaacttgcttggtaaacgtgttgacttctct
gggcgttcagttatcgccgtaggtccaacacttaaaatgtatcaatgtggtgtgccacgt
gaaatggctatcgaattgttcaaaccattcgtaatgcgcgaaatcgttgcacgtgactac
gctggtaacgttaaagctgctaaacgcatggttgaacgtggagatgaacgtatttgggat
attcttgaagatgttattaaagaacacccagtacttcttaaccgcgcaccgactcttcac
cgtttgggtatccaagcctttgaaccagtccttatcgatggtaaagcacttcgtcttcac
ccacttgtttgtgaagcctacaatgccgacttcgatggtgaccaaatggccatccacgta
ccactttctgaagaagctcaagcagaagcacgtcttcttatgcttgccgcagaacacatc
cttaaccctaaagatggtaaaccagtcgtaactccatctcaagatatggttcttggtaac
tactacctaactatggaagaaccaggtcgtgaaggtgaaggaatggtcttcaaagaccgt
gatgaagcagttatggcataccgcaatggttatgttcacttgcacacacgtgttggtatt
acagttgatagcatgccaaacaaaccatggactgatgaacaaaaacacaaaatcatggtt
acaactgttggtaagatcctctttaatgacatcatgcctgatgatctaccttaccttcaa
gaaccaaataatgctaacttgactgaaaaaactccagataaatacttcttggcacctggt
caagatatccacactgttatcgacagcttggacatcaacgttccattcaagaagaaaaat
cttggtaacatcattgcggaaatctttaaacgtttccgtacaacagaaacatcagccttc
cttgaccgcttgaaagaccttggttactaccattcaactcttgctggtttgacagtgggt
atcgctgatatcccggttatcgataacaaacaagaaattatcgatgcagcccacagcaaa
gttgaacaaattaacaaagccttccgtcgtggtttgatgactgatgatgaccgttatgtt
gctgttacaacaacatggcgtgaagctaaagaagaacttgaacaacgtctgatcgaaaca
caagatcctaagaacccaatcgttatgatgatggactcaggagctcgtggtaacatctct
aacttctcacaacttgccggtatgcgtggtttgatggctgctccgaacggacgtatcatg
gaattgcctatcttgtctaacttccgtgaaggtttgtctgtcttggaaatgttcttctca
actcacggtgctcgtaaaggtatgaccgatacagcccttaagactgccgactctggttac
cttactcgtcgtttggttgatgttgcccaagacgttatcattcgtgaagacgattgtgga
actgaccgtggtcttgttatcagtgctattactgacggtaaagaagttacagaaactctt
gaagaacgtcttgttggtcgttatactaagaaatctgttaaacaccctgaaactggcgaa
gttatcgttggtgctgatgtcttgattactgaagatatggcagctgaaatcgttaaagct
ggtgtagaagaagtaacaatccgttcagtatttacatgtaacactcgtcatggtgtctgc
cgtcactgttatggtgtcaaccttgctacaggtgatgctgttgaagttggtgaagcagtt
ggtacaattgccgctcaatctatcggtgaacctggtacacagcttacaatgcgtaccttc
cacacgggtggtgttgcgtcaaataccgatatcacacaaggtcttcctcgtatccaagaa
atctttgaagctcgtaaccctaaaggggaagcagttatcactgaagttaaaggtactgtt
gttgacatcgaagaagatgcttctacacgtactaagaaagtttacgttcaaggtaagact
ggtatgggtgaatacgtggtaccattcacagctcgtatgaaagtagctgttggtgatgaa
gtacaccgtggtgcaccacttactgaaggttctatccaacctaaacgtctccttgaagtt
cgtgatacattatcagttgaaacttaccttcttgccgaagtacaaaaagtataccgtagc
caaggggtagaaatcggtgataaacacgtcgaagtaatggttcgtcaaatgcttcgtaaa
gttcgtatcatggatccaggtgatacagatcttcttccaggtacacttatggatatcgca
gacttcacagatgctaacaaagatgttgttatctctggtggtattcctgcaactgcacgt
ccagtacttatgggtattactaaagcttcgcttgaaactaactcattcttgtcagctgca
tcattccaagaaacaactcgtgttcttacagatgctgctatccgtggtaaaaaagatcac
cttcttggtcttaaagaaaatgttatcatcggtaaaatcattccagctggtacaggtatg
gcacgttaccgtaaccttgaaccacaagctgttaatgaacttgaaacaagtgaagaagct
gaaacagttgaagcatctgcatcaacagacgctgaataa
DBGET
integrated database retrieval system
