Streptococcus ruminicola: GPZ88_07800
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Entry
GPZ88_07800 CDS
T08901
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
srum
Streptococcus ruminicola
Pathway
srum03410
Base excision repair
srum03430
Mismatch repair
srum03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
srum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GPZ88_07800 (recJ)
03430 Mismatch repair
GPZ88_07800 (recJ)
03440 Homologous recombination
GPZ88_07800 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srum03400
]
GPZ88_07800 (recJ)
DNA repair and recombination proteins [BR:
srum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
GPZ88_07800 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
GPZ88_07800 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GPZ88_07800 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QIM46937
UniProt:
A0A6G8I1B9
LinkDB
All DBs
Position
1527357..1529561
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AA seq
734 aa
AA seq
DB search
MITSKYNWKNIEKEPDDGFFEVTKKENITALASKILYSRGIDNGEKLAQFLSNDLSQLHD
PYLLHDMDKAVARIRQAIENYEQILVYGDYDADGMTSASIMKEALEMLGAEVQVYLPNRF
VDGYGPNESVYKYFIEQQQVSLIITVDNGVAGHEAISYAQSQGVDVIVTDHHGLPAELPD
AFAIVHPEHPEADYPFKYLAGCGVAFKVACALLESIPTEMLDLVAIGTIADMVSLTDENR
IMVKVGLEMLKQTERIGLMELMKVSDIDMSDVNEETVGFKIAPQLNALGRLDDPNPAVEL
LTGFDDEEALSIAQMINAKNEERKEIVQKIYDEAMGMVDLDKPVQVLAKEGWHPGVLGIV
AGRILEHIAQPVIVLNIEDGMAKGSARSIEAINIFHALDEHRDLFEAFGGHAGAAGMTLP
VDNLEQLSQVLCDYIAENDINLAQKKTLTIDEVLPLAEIDLDTVKSLEKIAPFGMDNPKP
VFEIKDFEVKQARTMGQNGAHLKLKIAQGSTAVDLVAFNQGHLVQEFQQAQNLCLAVTLS
INKWNGQTTVQLMLEDARVDGVQLIDIRAKNASLPERVPVLSKDTSASEVVVLDIPEKAE
ELKSLFVGRQFDAVYFKNHIKRAYYLTGYGTREQFAKLYKTIYQFPEFDVRYKLKDLSQY
LNIPDILLVKMIQIFDELDFVTITDGVMVVNKDAQKRSISDSQIYQNLKQEVKYQELMAL
GTPQEIYDWLMDNN
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgataacaagtaaatacaattggaaaaacattgaaaaagagccagatgatggctttttt
gaagtgacaaaaaaagaaaatataacggcattagccagcaaaattctatacagtcgaggc
attgataatggcgaaaaactagctcaatttttatcaaatgatttatcacaacttcatgat
ccatatttgttgcatgatatggacaaggcagttgctcgcattcgtcaagctattgaaaat
tacgaacagattctagtctatggtgactatgatgctgatggtatgactagcgctagcatt
atgaaagaagccttggaaatgcttggggctgaggttcaagtctatctccctaaccgattt
gttgatggctatggaccaaatgaatcggtctataaatactttattgagcaacaacaggtt
tctttgattattacggtggataatggcgtagctgggcatgaagctattagctatgcacaa
agtcaaggagtagatgtcattgttactgaccaccatggcttaccagcagagcttccagac
gcatttgccattgtacatccagagcacccggaagcggattatccgttcaagtatttagca
ggatgtggcgtagctttcaaagttgcttgtgccttgttggaatcaattcccacagaaatg
ctagatttagttgctatcggaacgattgccgatatggttagtctaacagatgaaaatcgt
atcatggttaaggttggtcttgaaatgctcaagcagaccgaacgcattggtttaatggaa
ctaatgaaagtatctgatattgacatgtcagatgttaatgaggaaactgttgggtttaaa
attgcaccgcagctaaatgctcttggtcgtctagatgatccaaatccagctgttgagtta
ttgactggctttgatgatgaagaagcgctaagtattgcgcaaatgattaatgccaaaaat
gaagaacgtaaagaaatcgttcaaaagatttatgacgaagccatgggcatggttgacctt
gataagcctgttcaagtgttagcaaaagaaggctggcatccaggtgttcttgggattgtc
gctggtcgtattttggagcatattgctcagccagttattgtcttaaacattgaagacggc
atggcaaaaggttctgctagaagtattgaggctatcaatatcttccatgcgcttgatgaa
catcgtgatttatttgaagcatttggtggacatgctggcgcagctgggatgaccttgccc
gttgataacttagagcaattgtcacaggtcttgtgcgattacattgctgaaaatgatatt
aatttagctcagaaaaagacgctgacaattgacgaagttttgccactagctgaaattgat
ttagacacggttaagagccttgaaaaaattgcaccgtttggtatggacaatccaaaacca
gtttttgagattaaagattttgaagttaaacaagcacgtaccatggggcaaaatggtgcc
cacttgaagttaaaaattgctcaaggaagcacggcagttgaccttgttgcctttaaccaa
ggtcatttggtacaagaatttcaacaagcacagaatctctgtcttgcggttaccttgtca
atcaacaaatggaacgggcaaaccactgttcagttgatgcttgaagatgcgcgtgttgac
ggcgttcagttgattgatattcgcgctaaaaatgccagtcttcctgaacgtgttcctgtt
ttgagtaaagacactagtgccagtgaagtggttgttctggacatccctgagaaggctgaa
gaactcaaatcactttttgttgggcgacaatttgatgctgtttattttaaaaaccacatc
aaacgtgcctattatttgacaggttatggaactcgcgaacaatttgctaaattgtataaa
accatttaccaattccctgaattcgacgttcgttataaactaaaagacttgagtcaatac
ctcaatatcccagatattttgctggtgaaaatgattcaaatctttgatgaattagatttc
gtaactatcacagatggtgttatggttgttaacaaagatgctcaaaaacgtagcatctca
gacagccaaatttatcaaaacctgaaacaagaagtgaagtaccaagaactcatggcactt
ggtaccccacaagaaatctatgattggttaatggataataattaa
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