Streptococcus ruminicola: GPZ88_08905
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Entry
GPZ88_08905 CDS
T08901
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
srum
Streptococcus ruminicola
Brite
KEGG Orthology (KO) [BR:
srum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
srum03032
]
GPZ88_08905 (topA)
03400 DNA repair and recombination proteins [BR:
srum03400
]
GPZ88_08905 (topA)
Enzymes [BR:
srum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
GPZ88_08905 (topA)
DNA replication proteins [BR:
srum03032
]
Prokaryotic type
DNA Topoisomerases
GPZ88_08905 (topA)
DNA repair and recombination proteins [BR:
srum03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
GPZ88_08905 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
DUF2996
Toprim_4
C1_2
Beta-Casp
Motif
Other DBs
NCBI-ProteinID:
QIM47144
UniProt:
A0A6G8I1U9
LinkDB
All DBs
Position
complement(1758373..1760511)
Genome browser
AA seq
712 aa
AA seq
DB search
MATTTTKAQTAVKKTSKKTTKKKTAAKKNLVIVESPAKAKTIEKYLGRNYKVVASVGHIR
DLKKSSMSIDFENNYEPQYINIRGKGPLINDLKKEAKKSKKVYLASDPDREGEAISWHLA
HILGLDENDKNRVVFNEITKDAVKNAFVEPRQIDMDLVDAQQARRVLDRIVGYSISPLLW
KKVKKGLSAGRVQSVALKLIIDRENEIKNFKPEEYWTIDGFFKKGTKKFQAAFYGIDGKK
LKLNTNEDVQAVLARLTSDEFNVAKVEKKERRRNAPLPYTTSSLQQDAANKINFRTRKTM
MVAQQLYEGISLGKSGTQGLITYMRTDSTRISPVAQNDAAGFITERFGENYSKHGSRVKN
ASGAQDAHEAIRPSNVNLTPESIAKHLDKDQLKLYTLIWNRFVASQMTAAVFDTMKVNLE
QNGVRFTANGSKVKFDGYLAVYNDSDKNKMLPDMVEGDVVKKVSTNPEQHFTQPPARYSE
ATLIKTLEENGVGRPSTYAPTLDVIQRRYYVRLVSKRFEPTELGEIVNNLIVEFFPDIVD
VKFTADMEGKLDEVEEGKEQWQKVIDAFYKPFEKELAKAETEIEKIQIKDEPAGFDCDVC
GHPMVIKLGRYGKFYACSNFPECHNTKAITKEIGVTCPICGEGQVIERKTKRNRLFYGCD
RYPECEFTSWDKPVGRSCPKCGQFLVEKKIRGGGKQVVCSNEECDYEEAKVK
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgactactacaaaagcccaaacagctgttaaaaagacaagtaaaaaaacaaca
aagaaaaaaacagctgccaagaaaaacttggttattgtggaatcaccagctaaagcaaaa
accattgaaaaatatctaggacgcaactacaaagttgtcgcttcagttggtcatatccgt
gatttgaaaaaatcaagcatgtctattgattttgaaaacaactatgaaccgcagtatatt
aatatccgtggtaaaggtcctctaattaatgatttgaaaaaagaggctaaaaaatctaaa
aaagtttatctcgcaagtgacccggaccgtgagggagaagctatttcatggcatttggca
cacattttgggacttgacgaaaacgataaaaaccgtgttgttttcaatgaaatcactaag
gatgctgttaagaatgccttcgttgaaccacgtcagattgacatggatttggtagatgcg
caacaagctcgtcgtgttcttgaccgtattgttggttattctatctcaccattgctttgg
aaaaaggttaaaaaaggtctttctgcaggtcgtgtgcaatctgtagcactgaaattaatt
atcgaccgtgaaaatgagattaaaaactttaaacctgaagaatactggacaattgatgga
ttcttcaaaaaaggaactaaaaaattccaagctgctttttatggcatcgatggtaaaaaa
ctaaaactcaacactaacgaggatgtccaagcagttcttgctcgacttacaagtgacgag
tttaacgtagcaaaagttgaaaagaaagagcgtcgtcgtaacgcaccacttccatataca
acatcatctcttcaacaagatgctgctaacaaaatcaacttccgtacacgtaagactatg
atggttgctcaacagttgtacgaagggattagtcttggtaagagtggtacacaaggtttg
attacttacatgcgtaccgactctacacgtatcagccctgttgcgcaaaatgatgctgca
ggctttattacagaacgtttcggtgaaaattactctaaacacggtagtcgtgtgaaaaac
gcttcaggtgctcaagatgcccacgaggctattcgcccatcaaacgttaacctaacacca
gaatctatcgcaaaacacttagacaaagaccaattgaaactctacacattgatttggaat
cgatttgtcgcaagtcaaatgacagctgcggtgtttgataccatgaaagttaatttggag
caaaatggcgttcgcttcacagctaacggtagtaaagtcaaatttgacggttacttggct
gtctacaacgattctgataagaataaaatgttgcccgacatggttgaaggcgatgttgtt
aagaaagtttcaacaaatcctgaacaacacttcactcaaccaccagcacgttattctgaa
gccacattaatcaaaacgcttgaagaaaacggtgttggacgtccatcaacatatgcacca
acacttgatgttatccaaagacgttactacgttcgcttggtttcaaaacgcttcgaacca
actgaattgggtgaaatcgttaataacttgattgttgaattcttcccagatatcgttgat
gtcaaatttaccgctgacatggaaggtaaacttgatgaagtcgaagaaggaaaagaacag
tggcaaaaagtcattgatgctttctacaaaccatttgaaaaagaactagcaaaagcagaa
actgaaattgaaaaaattcaaatcaaagatgagcctgctggttttgactgtgacgtttgt
ggacatccaatggttattaaacttggtcgctacggtaaattctatgcttgtagtaatttc
ccagaatgtcacaataccaaagccatcacaaaagaaattggtgtgacttgtccaatttgt
ggcgaaggtcaagtgattgaacgtaagacaaaacgtaatcgtcttttctatggctgtgac
cgatatcctgagtgtgaattcacttcatgggataaaccagtcggacgttcttgtccaaaa
tgtggtcaattcctcgttgagaagaaaattcgtggcggtggtaaacaagtcgtctgcagc
aacgaagaatgtgactatgaagaagcaaaagttaaataa
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