Streptococcus rubneri: LPB404_01540
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Entry
LPB404_01540 CDS
T09579
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
srun
Streptococcus rubneri
Pathway
srun03030
DNA replication
srun03410
Base excision repair
srun03420
Nucleotide excision repair
srun03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
srun00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LPB404_01540 (polA)
03410 Base excision repair
LPB404_01540 (polA)
03420 Nucleotide excision repair
LPB404_01540 (polA)
03440 Homologous recombination
LPB404_01540 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
srun03032
]
LPB404_01540 (polA)
03400 DNA repair and recombination proteins [BR:
srun03400
]
LPB404_01540 (polA)
Enzymes [BR:
srun01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LPB404_01540 (polA)
DNA replication proteins [BR:
srun03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LPB404_01540 (polA)
DNA repair and recombination proteins [BR:
srun03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
LPB404_01540 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LPB404_01540 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
QXW96945
LinkDB
All DBs
Position
310095..312740
Genome browser
AA seq
881 aa
AA seq
DB search
MENKNKLLLIDGSSVAFRAFFALYNQIDRFKNANGLHTNAVYGFNLMLSHLLERIQPTHV
LVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIREQLDHLGIRHYELAQYEADDII
GTLDKMAEATSVPFEVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYLKEKMGLT
PEQFIDLKALMGDKSDNIPGVTKIGEKTGIKLLLEYGSLDGIYEHIDEMKASKMKENLIN
DKEQAYLSKTLATIDTNAPIEISLDDITYTGPHLENLAKFYEEMGFKQLRQALDLGGEEV
APVALDYTEVEQVTSDMLTEDSFFHFEIFGDNYHTEPIIGFAWGTKGQLYASTDTSLLQT
PVFKEFLEKTPLKVYDFKRAKVLLSHLGITLQTPAFDSRLAKYLLSTVEDNEISTIASLY
SQIALPLDEVVYGKGAKKAIPERVVLLEHLARKVAVLLDTEGPMVEQLQAHDQLDLLYDM
EQPLAAVLAKMEIAGIKVERQTLEDMQVENEVVLERLTQEIYELAGEEFNINSPKQLGAI
LFEKLELPLEYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQIAKIQSTYVIGLQDWI
LEDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEEKNSVLLSSDYSQ
IELRILAHISGDEHLIDAFKHGADIHTSTAMRVFNIEKPEDVTPNDRRNAKAVNFGVVYG
ISDFGLSNNLGISRKEAKAYIETYFERYPGIKDYMERVVREARDKGYVETLFKRRREIPD
INSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDQALEAGVYKTKMLLQVHDEIVLQ
VPKEELTKIKQLVKETMESAIELAVPLEADENEGKTWYEAK
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atggaaaataagaacaaattattactcatcgacgggtcttccgtcgcttttcgtgccttt
ttcgcactttataatcaaatcgatcgctttaaaaacgccaatggattgcataccaatgcg
gtctatggttttaacctcatgttgagccatctcttggagcgcatccaaccaactcatgtc
ctcgttgcttttgatgcaggaaagacgaccttccggacggagatgtacgccgactacaaa
gggggacgtgcaaagacaccagatgaattccgtgagcagtttcctttcattcgcgagcaa
ttggaccatctggggattcgccattatgagctggcccagtatgaagcggatgacatcatt
ggaacgctagataagatggcagaagccacctctgtgccctttgaagtcactattgtctct
ggggacaaggacttgattcagctgacagatgacaatacggtggttgaaatctctaaaaaa
ggggtggcagagtttgaagaattcactccagcctatttgaaagaaaagatgggactgaca
ccagagcagtttatcgacctcaaggccttgatgggagataagtcggataatatcccaggt
gttaccaagattggagaaaagactgggattaaactactcctagagtacggctctctcgat
ggcatttacgagcatattgacgagatgaaggcttccaaaatgaaggaaaatctcatcaac
gataaggagcaggcctacctgtccaagacccttgcgaccatcgataccaatgcgcccatt
gaaattagcttggacgatatcacctatacgggacctcatttagaaaatctcgccaagttt
tatgaggagatgggcttcaagcaactccgtcaggccttggatttaggcggagaagaagtg
gctcctgtagcccttgactatacagaagtcgagcaagtcacctcagatatgctcacagaa
gatagtttcttccattttgagatttttggggacaattaccatacagagcccatcatcggt
tttgcatgggggacaaaaggccagctctacgcaagtacagataccagtttgttgcaaacg
cccgttttcaaagaatttctcgaaaaaacgcccctcaaggtctatgacttcaagcgggcc
aaggtcttgcttagccacttgggcattaccctgcaaacgccggcttttgatagtcgtttg
gccaagtatctcttgtcgaccgtagaggacaatgaaatttcaaccattgcgagcctctat
agtcagattgcgctaccgctcgacgaagttgtttatggcaagggagccaaaaaagccatt
ccagaaagggtggtcctattagagcatttggcacgaaaagttgctgttctacttgacacc
gaagggcccatggtggagcagttgcaagcccatgaccaactcgatttgctctatgatatg
gagcaaccactagcagctgttttagccaagatggaaattgcggggattaaggtggaacgc
cagaccctagaagacatgcaggtggaaaatgaagtagtcttggagcgcttgacccaagaa
atttacgagttagctggagaagagttcaacatcaattctccaaaacaattgggggccatc
ctctttgaaaaattggaacttcctcttgaatataccaaaaagaccaaaaccggttattca
actgctgtcgatgtcttggaacgcctggctccgatcgcacccattgtgtctaagattctg
gaataccgccagattgctaagattcagtcgacctatgtcatcgggcttcaagactggatt
ttggaagatgggaaaatccatacccgctatgtacaggatttgacgcagacaggtcgtttg
tctagtgtggatcccaacctgcaaaacatccctgtccgtttagaacaaggtcgtctcatt
cgtaaggcttttgttccagaagagaaaaacagtgtcttgctgagttcggattactcacag
attgaattgcgcatcttggcccatatttcaggagatgagcatttgattgatgcctttaag
catggggcagatatccatacatcgactgctatgcgggtctttaatattgaaaaaccagaa
gatgtgacaccaaatgaccgtcgcaatgccaaggcagtaaacttcggcgtggtttatgga
atttctgattttggactgtctaacaacctagggatcagtcgaaaggaagctaaagcctac
attgagacctattttgaacgctatcctggcatcaaggattatatggagagagtggtgcgg
gaagcgcgtgataagggctatgtagagaccctcttcaagcgtcgccgggaaattccagat
atcaattctcgcaacttcaatattcgaggttttgcggagcggacggccatcaactcaccg
attcaaggatcggcagcagacatcttgaaaattgccatgatccaactggaccaagcgcta
gaagcaggggtctacaagaccaagatgcttcttcaggtccacgatgaaatcgtccttcaa
gtgccaaaagaagagttgaccaagatcaagcagttggtcaaagagaccatggaatctgct
attgaactagcggttccactggaagctgatgagaacgaaggcaaaacgtggtatgaagct
aaataa
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