Streptococcus rubneri: LPB404_02440
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Entry
LPB404_02440 CDS
T09579
Name
(GenBank) PolC-type DNA polymerase III
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
srun
Streptococcus rubneri
Pathway
srun03030
DNA replication
srun03430
Mismatch repair
srun03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
srun00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LPB404_02440
03430 Mismatch repair
LPB404_02440
03440 Homologous recombination
LPB404_02440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
srun03032
]
LPB404_02440
03400 DNA repair and recombination proteins [BR:
srun03400
]
LPB404_02440
Enzymes [BR:
srun01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LPB404_02440
DNA replication proteins [BR:
srun03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LPB404_02440
DNA repair and recombination proteins [BR:
srun03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LPB404_02440
BRITE hierarchy
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
DNA_pol3_a_NII
DNA_pol3_a_NI
HHH_6
tRNA_anti-codon
RNase_H_2
HHH_3
Rv2179c-like
DEDDh_C
Motif
Other DBs
NCBI-ProteinID:
QXW97098
LinkDB
All DBs
Position
479320..483711
Genome browser
AA seq
1463 aa
AA seq
DB search
MSTSFEILMNQLGMPLEMRESGAFEGAEIQEVIVHKLSRVWEFRFVFAEILPITIFQELK
NRLAEEFSKTGNRAVFEIQVKNPTFSEDLLQAYYQEAFEDGPCASQGFKSMYQHLQVRAQ
GEELIISGPSSVDTEHHRKNHLPNLASQLTKFGFPHFQCRVEADDQLTEELQQAFEAEKN
QIFQAANEETLRAMESLSQMAPPPAEEKPAFDFKAKKAVAKPKLDKAEITPMIDITTEEN
RIVFEGVVFDVEQKVTRTGRVLINFKMTDYTSSFSLQKWAKNEEEAQKFDIIKKNSWLRV
RGNIEVNNFTRDLTMNVQDVQEVVHYERKDLMPEGERRVEFHAHTNMSTMDALPEVEELV
AKAAKWGHKAVAITDHGNVQSFPHGYKAAKKAGIQLIYGMEANIVEDRVPITYNEVDLDL
HEATYVVFDVETTGLSAIYNDLIQVAASKMHKGNIIAEFDEFINPGHPISAFTTDLTGIT
DDHVRNAKPLKQVLEEFQEFCKDAVLVAHNATFDVGFMNANYERHGLPKITQPIIDTLEF
ARNLYPEYKRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLAKL
NLDLISPDSYKKARVKHATIYVKNQTGLKNMFKLVSLSNTQYFEGVPRIPRTVLDAHREG
LILGSACSEGEVFDAVVSQGVDAAVEVAKYYDFIEVMPPAIYAPLIAKEQVKDMDELQTI
IKSLIEVGDRLGKPVLATGNVHYLEPEEEIYREIIVRSLGQGAMINRTIGHGENAQPAPL
PKAHFRTTNEMLDEFAFLGEDLARKLVIENTNALAEIFEPVEVVKGDLYTPFIDKAEETV
AELTYQKAFEIYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQLLVHRSNERGYLVGSR
GSVGSSFVATMIGITEVNPLSPHYVCGECKYSEFITDGSYGSGFDMPNKDCPNCGHQLSK
NGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAAKTA
YGFVKGYERDYGKYYRDAEVERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPA
DDVTAEWQTTHFNFHDIDENVLKLDVLGHDDPTMIRKLQDLSGIDPNNIPMDDPGVMALF
SGTDILGVTPEQIGTSTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLG
NAQDLIKAGIADLSTVIGCRDDIMVYLMHAGLDPKMAFTIMERVRKGMWLKIPEEERNGY
IEAMKANNVPEWYIESCGKIKYMFPKAHAAAYVMMALRVAYFKVHHPLYYYCAYFSIRAK
AFDIKTMGAGLEAVKARMKDIAEKRKNNEASNVEIDLYTTLEIVNEMWERGFKFGKLDLY
RSDATEFLIDGDTLIPPFVAMDGLGENVAKQIVRARKEGEFLSKTELRKRGGVSSTLVEK
MDEMGILGNLPEDNQLSLFDDLF
NT seq
4392 nt
NT seq
+upstream
nt +downstream
nt
atgtcaactagctttgaaatcttaatgaatcagttagggatgcctttggaaatgcgtgaa
tcaggcgcttttgaaggggctgaaatccaagaggtcatcgtccataagctcagtcgtgtt
tgggaatttcgttttgtttttgccgaaattcttcccatcacgatttttcaggagctcaaa
aaccgcttggctgaggagttttcaaagacaggcaatcgagcggtgtttgagattcaggta
aagaatccaacttttagtgaggacctcttgcaagcctattaccaggaagcttttgaagat
ggtccctgtgcgagccaaggctttaagagcatgtatcaacacttgcaggttcgtgcacag
ggagaagagctgatcattagtggcccttcatctgtggatacggagcatcaccggaaaaac
catctgccaaatcttgctagtcaattgaccaagtttggttttcctcattttcagtgtcgg
gtagaagctgatgaccagttgacagaagaactccaacaggccttcgaagctgagaagaat
caaatcttccaagcagccaacgaagaaactttgcgggctatggagtccttgtctcaaatg
gccccaccgccagcagaggaaaaaccagcctttgatttcaaagccaaaaaggctgtggcc
aagcctaagctggataaggcagagatcactcctatgattgatatcacgacagaagagaat
cgcattgtttttgaaggggtcgtctttgatgtcgagcaaaaggtaactcggacaggtcga
gtcttgatcaatttcaagatgaccgactatacctccagtttttcgctccagaaatgggct
aaaaatgaagaagaagctcagaagtttgatataatcaagaaaaactcttggttacgggtt
cgtgggaatatcgaggtcaataactttacacgagatttgaccatgaatgttcaagatgtt
caagaagtggtccactatgagcgtaaggatctgatgccagaaggcgagcgtcgggtcgag
ttccatgcccataccaatatgtcgaccatggatgccctacctgaggtagaggagttggtc
gcaaaagcagctaaatggggccacaaggcagttgccattaccgatcacggcaatgtgcag
tccttccctcatggttacaaggcggctaaaaaagctggcatccaactcatctatgggatg
gaagccaatatcgttgaagaccgtgtgccgattacctacaatgaagtcgatctagacctt
catgaagcaacctatgtggtttttgacgtggaaacgacaggactctcagcgatttacaat
gatctgattcaggttgccgcttctaaaatgcacaagggcaacatcattgctgaatttgat
gagtttatcaatccaggccaccccatttccgcctttacaacggatctgacagggattact
gatgaccatgttcgcaatgccaaacctttgaaacaggtcttggaggagttccaggaattc
tgcaaggatgcggttctggttgcccacaatgccacttttgacgtgggcttcatgaatgcc
aactatgagcgtcatggccttcctaaaatcactcagccaataattgatacgttagagttc
gctcggaacctttatcctgagtacaagcgtcatggtttgggacccttgaccaagcgcttt
ggggttgctttggaacatcaccatatggccaactatgatgcagaagcgacgggccgtctg
ctctttatctttatcaaggatgtagcagaaaagcatggcgtgaccaatctggccaagctg
aatttggatttgattagtccggattcctacaaaaaggctcgggtcaaacacgcaaccatc
tatgtcaagaaccagaccggcttgaaaaacatgttcaaactggtctccctttccaatacc
caatattttgagggagttcctcggattccgcggacagttttagatgcccatcgggaaggt
ttgattttaggatcagcttgttctgaaggagaagtctttgacgcggtcgtctctcaagga
gttgacgcggcagtggaagtggccaagtattatgactttattgaggtcatgcctccagcc
atttatgcgcccctcattgctaaagagcaggtcaaagatatggatgagctccagaccatc
atcaagagcttgattgaggtgggagatcgcctcggcaagccagtcctggcgacagggaat
gtccactatctagagcctgaggaagagatctatcgggaaatcattgtccgcagtcttggg
caaggggccatgattaaccggaccatcggccatggagaaaacgcccaacctgcacccctg
ccaaaagctcatttccgtacaaccaatgaaatgttggatgaatttgcctttctaggggaa
gacttagcacgaaaactggtcattgaaaacaccaatgctctggcagaaatctttgaacct
gtcgaagtggtcaagggggacctctataccccatttatcgacaaggccgaagaaacagtt
gccgaattgacctatcagaaggcctttgaaatctatggcaatccgctacctgatattgtt
gatttacggattgaaaaagaattgacctctatcctggggaatggcttcgccgtgatctat
ctggcttcccaactcttggtgcatcgctctaatgagcggggctacttggttggttcacgg
ggatctgttggatccagttttgttgcgaccatgatcgggatcaccgaggttaatccgctc
tctcctcactatgtctgcggggagtgtaaatacagtgagtttatcacggatggttcttat
ggttcaggatttgatatgcccaataaggactgtccaaactgtggtcaccaactcagcaaa
aacggccaagacattcctttcgagaccttccttggttttgatggggacaaggtacccgat
atcgatttgaacttctcaggggaagatcagccgagtgcccacttggatgtccgcgatatt
tttggagaagaatatgccttccgggcaggaacagtaggtacagttgcagccaagacagcc
tatgggtttgttaaaggctatgagcgggactacggcaagtattaccgggatgcagaggtg
gaacgcctagcgcaaggtgctgctggagttaaacggacgaccggccagcacccagggggg
atcgttgttattccaaactatatggatgtctatgacttcacccctgttcagtacccagca
gatgatgtgacagccgaatggcagaccactcactttaacttccacgatatcgatgagaac
gtacttaaactcgatgtcctgggacatgatgatccgaccatgattcgcaagctccaggac
ttgtcaggtattgatccaaacaatattcctatggatgatccaggtgtcatggccctcttc
tcaggaaccgacatcttaggagtcacaccggagcaaatcggtacctcaaccggtatgctg
ggaatcccagaatttgggaccaactttgttcggggcatggttgatgaaacccatccgacc
acctttgccgaattgcttcagctttctggtctgtctcacggtaccgacgtatggttagga
aatgcccaagacttgatcaaggcagggattgctgacctatcaaccgttatcggatgtcgg
gacgacatcatggtttacctcatgcacgctggtctagatccaaaaatggcctttaccatc
atggagcgggtgcggaaagggatgtggctcaagattcctgaagaagagcgcaatggttat
attgaggccatgaaggctaacaatgtaccggaatggtacattgagtcttgtggaaaaatc
aagtacatgttccctaaagcccatgcggcagcctatgttatgatggccttgcgggtggct
tactttaaggttcatcatcctctctactattactgtgcttacttctctattcgtgccaag
gcctttgatatcaagaccatgggcgcaggcctagaagccgtgaaagcgcggatgaaggac
attgctgaaaaacgcaagaacaacgaagcttccaatgtagaaattgacctttacaccaca
cttgaaattgtcaatgagatgtgggaacgaggtttcaagtttggtaagctagacctctat
cgcagtgatgcgacggaattcttgatcgatggagacacccttatcccaccatttgtcgcc
atggatggattgggagagaacgtagccaagcagattgtacgagctcgaaaagaaggagaa
ttcctctctaaaacagagttacgcaaacgtggcggtgtctcctcaaccttggtagaaaag
atggatgagatgggcattcttggtaatttgccagaggacaatcagttgagtttgtttgat
gatttgttctaa
DBGET
integrated database retrieval system
