Streptococcus rubneri: LPB404_03980
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Entry
LPB404_03980 CDS
T09579
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
srun
Streptococcus rubneri
Pathway
srun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPB404_03980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srun03019
]
LPB404_03980
03009 Ribosome biogenesis [BR:
srun03009
]
LPB404_03980
Enzymes [BR:
srun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LPB404_03980
Messenger RNA biogenesis [BR:
srun03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LPB404_03980
Ribosome biogenesis [BR:
srun03009
]
Prokaryotic type
rRNA helicases
LPB404_03980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
DUF6363
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QXW97375
LinkDB
All DBs
Position
773024..774598
Genome browser
AA seq
524 aa
AA seq
DB search
MKFNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL
EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGA
HIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLF
SATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVDQPE
LSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAA
RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQIIENLTKK
RMKGLKPASAEEAFQAKKQVALKKIERDFANEEIRSNFEKFGKDARQLASEFSPEELAMY
ILSLTVQDPDSLPEVEIAREKPLPFKPSGGGFGGKGKSGRGGRRGDDRRDRERRGNGRRD
EYRKGGRSKDRFDKEKRYRKDHKKPRNTSSEKKTGFVIRNKGDK
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatttaatgaatttaatctttctgctgatttgttagcagaaattgaaaaagcagga
tttgtagaagcaagtcctatccaagagcaaaccattcctttggctcttgaaggtaaagat
gtaatcggtcaagcacagactggtacagggaaaacagcagcctttggcttgccaaccctt
gaaaaaattcgtacagaagaagcaactatccaagctttggtcatcgccccaactcgtgaa
ctggctgttcaaagccaggaagaactcttccgctttggtcgtagtaagggtgtgaaagtc
cgttcagtatacggtggttcaagtattgaaaaacaaatcaaggcacttaaatcaggtgct
cacatcgttgtaggaacaccgggacgtttacttgacttgatcaaacgcaaggccttgaaa
ttacaagatattgaaactctcatccttgatgaagcagacgaaatgcttaatatgggattc
ctggaagacatcgaagccatcatctctcgtgtcccagaaaatcgtcagactctactcttt
tcagcaaccatgcctgatgccatcaaacggattggtgttcagtttatgaaagaacctgag
cacgtcaagattgcagccaaagaattaacaacagaactagtagaccagtactatatccgt
gtcaaagaacaagaaaaattcgacaccatgacacgtctgatggatgttgatcaacctgaa
ttgtcaatcgtttttggtcgtaccaaacgccgtgtagacgagttaactcgtggattgaag
atccgtggtttccgtgcagaagggattcatggagatttggaccaaaataaacgccttcgt
gtccttcgtgattttaaaaatggaaacctcgatgtcctcgttgcaacagacgttgctgct
cgtggtttggatatctcaggcgtgacccatgtctacaactatgatattcctcaagaccct
gagagttatgttcaccggattggtcgtacagggcgtgcaggtaagtcaggtcagtcaatt
accttcgtttcacctaatgaaatgggttatctccaaatcattgagaacttgactaaaaaa
cgcatgaaaggtctcaagccagcaagtgcagaagaagcctttcaagctaagaagcaggtc
gctcttaagaaaattgaacgtgattttgctaatgaggagattcgtagcaactttgagaag
tttggcaaggatgctcgtcaattggcctcagaattcagtcctgaagaattggctatgtat
atccttagcttaacagttcaggatccagatagtcttccagaagttgaaattgcgcgtgaa
aaaccactgccgtttaaaccgtctggtggtggatttggcggaaaaggcaagtctggtcgc
ggtggccgtcgtggagacgaccgtcgagaccgtgaacgccgtggcaatggacgtcgtgat
gaatatcgtaaaggtggacgctcaaaggatcgctttgataaagagaagcgttaccgcaag
gatcataaaaaacctcgcaatacttcaagtgagaagaaaacaggctttgtgattcggaac
aaaggggataaataa
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